| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4008 |
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| Symbol | |
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| ID | 5199714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4402885 |
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| End bp | 4404573 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640583566 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001264491 |
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| Protein GI | 148556909 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGGCA TGCCGAGGGT GGAGCCGTCC GCGAACTGGC GGCGAATTCG GATGATCTTC
GAGAAGCAGC GTACCGATCA TCGACCGGCA CATCTTCGTG CCCGCGCCCG GCGGCTGATG
CTGGGTTCGG TCCTGCTAGC CTGCCTTCCG TCGCTCCCCG CCCATGCCGA AACGCTGATG
GACGCGGTCG AGTCGGCCTA TGCGACCAAC CCGACGCTGG TCGAACAGCG CTATCGCCAG
AAGAGCACCA ACGAGACCTA CGTCCAGACG CGCGGCCAAT ATGGACCGAC CGTCTCGATC
ACCGGCCAGG CGAGCTACAG CTACGAGAAG CTCCGCCAGC GGTCACTCGA CAGCAACCAG
GGCGAACTGA GCGTCAGCGT GCGCCAGCCG GTCTATAGCG GCGGCCGCCT GCGCGGCGCG
CTCGCCGAAG CCCACGCCAA CGTCCGCGGC AGCCAGGAAC AGCTCCGCCG CGTCGAGGGC
GAGGTCGTCC GCCTCGTCAT CCAGGCCTAC GGCGCGGTGC TGCGCGACCA GCAGCGGCTG
GAGGTATCGC GCGAGAATGT CGCGGCCCTG CGCGAACAGC TTGCCGAGCG CAAGGCGCGA
CGCAAGGTGC GCGATGCGAC GATCACCGAC GTCGCCCAGT CGGACGCCCG ACTCGCGGCG
GGCGAAAGCC AGCTCGCCAC GGCCGAGGCC CAGCTCGCGA TCACCCGCGG CGATTATCTG
CGGATCGTCG GCCATGAACC GGGCGAGCTG CAGCCGATGC CCGAGCTGCC GGGCCTGCCC
GAGACGATCG ACGAGGCTTT CGCCGTCGCC GACCAGGAGA ACGCCAACCT CACCGCCGCG
CGCTTCTCCG AGGAGGCGAG CCGCGCCAAT ATCGCCGAGC AACGCGGCAA CAAGCGCCCA
CAGGCGACGA TCAGCGCGAG CGCCGGCAAG CTCGGTCCGC TGTCGCCCTA TGACCGGCAC
AATCTGCAGA CCGACGTCAC CGCGCAGATC ACGATCACCC AGCCGATCTT CCAGGCCGGC
ACGATCAGCT CGCGCATCCG CCAGGCGCAG GACCAGAACA ATGCCGCGCA GGCCGCGCTC
GACGGCGAAC GGCGGCAGGC GCTCCAGGAC GTCGTCCTGG CCTGGAGTCA GCTCTCCGCC
GCGCGCGTCG CGGTGGTGGC CGGCCGCCGC CAGGTCGAAG CCGCCCAGAT CACCTTCGCC
GGCATGCAGC GCGAGGAGCA ATATGGGCTG CGCAGCACGA CCGACGTGCT CAACGCCGAG
CAGGAGCTGG CATCGGCGCA GCTGACGCTG CTGTCGAGCC GCTACAGCGA ATATGTCGCG
CGCGCCTCGC TGCTGCTGGC GATGGGCCGG CTCGACGCGC GCACGGTCAA TTCGGCGATC
CCGGCACGCG ACCTCGATGC CGAGTTCAAG CGCGTCCGCT GGCGCGGCAT CTCGCCGACC
GAACCGGCGG CGATGCTGCT CGACCGGATC GGTTCGGCCA GCCCGCATGC GCGGCCCAAG
GTCGAGCTGC GCGGCGCCAA CCAGCCGAAG CCGACCGGCG CGACGACGAT GCCGCCGCCG
CCGCCCAAGG ATTCGGTGGA AGAGCCGCTC ACCCCGATCA GCAAGAGCCG GGTCGTGACC
GCCGCCGAGA TTCCGTCGAT CGTCGGCGAC TATGGCGACC CGCCGCCGCT CCCCGACGAT
CCTCGATGA
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| Protein sequence | MTGMPRVEPS ANWRRIRMIF EKQRTDHRPA HLRARARRLM LGSVLLACLP SLPAHAETLM
DAVESAYATN PTLVEQRYRQ KSTNETYVQT RGQYGPTVSI TGQASYSYEK LRQRSLDSNQ
GELSVSVRQP VYSGGRLRGA LAEAHANVRG SQEQLRRVEG EVVRLVIQAY GAVLRDQQRL
EVSRENVAAL REQLAERKAR RKVRDATITD VAQSDARLAA GESQLATAEA QLAITRGDYL
RIVGHEPGEL QPMPELPGLP ETIDEAFAVA DQENANLTAA RFSEEASRAN IAEQRGNKRP
QATISASAGK LGPLSPYDRH NLQTDVTAQI TITQPIFQAG TISSRIRQAQ DQNNAAQAAL
DGERRQALQD VVLAWSQLSA ARVAVVAGRR QVEAAQITFA GMQREEQYGL RSTTDVLNAE
QELASAQLTL LSSRYSEYVA RASLLLAMGR LDARTVNSAI PARDLDAEFK RVRWRGISPT
EPAAMLLDRI GSASPHARPK VELRGANQPK PTGATTMPPP PPKDSVEEPL TPISKSRVVT
AAEIPSIVGD YGDPPPLPDD PR
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