| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4007 |
|---|
| Symbol | |
|---|
| ID | 5199713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4401075 |
|---|
| End bp | 4402796 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583565 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_001264490 |
|---|
| Protein GI | 148556908 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATCCG TCCTGTTCGA GAAGAACATG ATCACCGATG CGCTGAAGAA GGGGAAGAAC
TCCTTCATCT GCGCGGCGCT GTTCAGCCTC GCGAGCAACC TGCTCTACCT GGCGCTGCCG
ATCTACACCA ACCAGATCTA TTCGCGGGTG CTCAACAGCC ACAGCGGCTC GACGCTGCTC
GTCCTGACCG GCGGCGCGCT GGTGGTGTTC ATGGTCTCGG GCGTCCTCGA CCATTATCGC
ACGCAGGTGC TGACCAATTT CTCGGTGGCG TTCGACCGCC AACTCGCGAG CCCGACCTTC
GCTGCACTGT TCGACCTCGT CGTCCGGCGG ATGGGCGGGT CGCACGCCCA GGCGCTCCGC
GATCTCGACG CGATCCGCGG CGCGATCAGC GGAGCCGCGG TCAGCGTCCT GTTCGACCTG
CCCTGGATGC CGATCTTCAT GGGTCTGCTG TTCATCATCG ATCCTTGGAT CGGCGTCGTC
ACGCTGGTCG GCGGCATCAT CCTGCTGATC CTGGCGGTGC TCCAGGACCG CGCCACCCAT
TCAGCGCTCA AGCAGGCGAG CGCCGCGTCG ATCAAGAGCT ATTCGTTCAC CGACGCCGCG
CTGCGCAATT CGGAGGTCGT CCGCGCGCTG GGCATGCTGC CCACCCTAGG CAGCGCCTGG
GCCGGCTATC GCCAGATGGC GCAGCGGATG ACGATCGTGG CGAGCAGCCG CGGTAGCTTC
TACTCCAGCA CGATCCGCTT CGTCCGCATG GGAATCCAGA TCGCGACGAT CGCGGTCGGC
GCCTATCTGG TGATCGCGGG CGACATCGCC TCGGGCCTGC TGTTCGCCAA CATGATCCTG
GCGAGCCGCG CGCTGGCGCC GATCGACCGA ATCGTCGGAT CGTGGAAGGT CCTGTTCGAG
GCATCGCAAT CCTATCGCCG GCTCGAAAAG GCGCTCAGCG ATTATGAACC GCCGGTGCCC
GCGACGCAGC TCCCCGTTCC GCAGGGGCGG ATCGCATTCG AGGGCGTCAG CTTCTCGACC
ACCGTTTCGC CCACGCCGAT CCTGGTCGGT GCCGGCTTCC TGATCCAGCC CGGCGAGATG
GTCGGCATCA TCGGGCCGTC GGGCGCAGGC AAGTCGACGC TGCTCCGGCT GATGGTCGGC
ATCTGGAAAC CGACGGCGGG GACGGTCCGC CTCGACGGCG CGGACGTCTA TAGCTGGGAG
CGCGGCAACT TCGGACAATA TGTCGCCTAT CAGCCGCAGG ATACCGAATT GTTCGCGGGA
ACGGTACGCG ACAATATCTG CCGCTTCCTG CCCGATGCCC AGGATGCGGA CATCATCAAG
GCCGCCCAGG CGGCCGGCGC GCACGAGCTG ATCCTGCGCC TGCCCAAGGG CTATGAGACC
GAACTCGGCG AAGGCGGCTC AGTCCTCTCC GCCGGGCAGC GGCAGCGCGT CGGCCTCGCC
CGCACGCTCT ACGGCGATCC GAAGGTCGCC GTGCTCGATG AGCCCAACGC CAATCTCGAC
GCGGAGGGCG AAGCCGCGCT AGCCGAGGCG ATCAAGGGGC TGAAGGAGCG CGGAACCACC
GTGGTCATGG TCTCGCACAA GCCGAGCGTG CTGGCCCACG CCGACAAGCT GATGATGCTG
CGCGGCGGCC GGATCGAACG CTTCGGTCCG CGCGAGGAGG TGATGCGCTC GCTCACGCCC
CAGAAGAAGC CGGTCCCGGC ACTGGCGGAG GCCAAGTCGT GA
|
|---|
| Protein sequence | MISVLFEKNM ITDALKKGKN SFICAALFSL ASNLLYLALP IYTNQIYSRV LNSHSGSTLL
VLTGGALVVF MVSGVLDHYR TQVLTNFSVA FDRQLASPTF AALFDLVVRR MGGSHAQALR
DLDAIRGAIS GAAVSVLFDL PWMPIFMGLL FIIDPWIGVV TLVGGIILLI LAVLQDRATH
SALKQASAAS IKSYSFTDAA LRNSEVVRAL GMLPTLGSAW AGYRQMAQRM TIVASSRGSF
YSSTIRFVRM GIQIATIAVG AYLVIAGDIA SGLLFANMIL ASRALAPIDR IVGSWKVLFE
ASQSYRRLEK ALSDYEPPVP ATQLPVPQGR IAFEGVSFST TVSPTPILVG AGFLIQPGEM
VGIIGPSGAG KSTLLRLMVG IWKPTAGTVR LDGADVYSWE RGNFGQYVAY QPQDTELFAG
TVRDNICRFL PDAQDADIIK AAQAAGAHEL ILRLPKGYET ELGEGGSVLS AGQRQRVGLA
RTLYGDPKVA VLDEPNANLD AEGEAALAEA IKGLKERGTT VVMVSHKPSV LAHADKLMML
RGGRIERFGP REEVMRSLTP QKKPVPALAE AKS
|
|---|
| |