| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3991 |
|---|
| Symbol | |
|---|
| ID | 5200643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4381281 |
|---|
| End bp | 4381808 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583548 |
|---|
| Product | periplasmic protein thiol--disulphide oxidoreductase DsbE |
|---|
| Protein accession | YP_001264474 |
|---|
| Protein GI | 148556892 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
|---|
| TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.375097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGC TGCTCATCTG GCTGCCGTTG GCGCTGTTCC TGGTCTTCCT CGGCGTGTTC
GCCAGCGGGC TGATCAGCCC CGAGAGCAAG ACCATCCCGT CCAAGCTGGT CGGCAAGCCG
ATGCCGGGCT TCGCGCTGGC CCCGGGGGTT CCCGGCAAGC CCGGCCTGAC CAGCGCCGAG
CTGACCAACG GCCGGCCGCA CCTCGTCAAC GTCTTCGCGA GCTGGTGCGT CCCCTGCATC
GCCGAGGCGC CGCAGCTCCG CCAGCTCGCC GAGGCCGGGG TGCCGGTCTA CGGCATCGCC
ATCCGCGACC GGCCGGAGGA CCTCGCCCGC TTCCTCGAAC GCAACGGCGA CCCGTTCCGC
GCGATCGGCG GCGATCCCAA CAGCAGCGTC CAGATCGCGC TCGGATCGTC GGGCGTGCCC
GAGACCTTCA TCGTCGACGG CAAGGGCATC ATCCGCCGCC AGCATATCGG CGCGATCAAC
CCGGAGGACG TCCCCGGCAT CATGTCCGCG CTGGGAGACG CGCGATGA
|
|---|
| Protein sequence | MRKLLIWLPL ALFLVFLGVF ASGLISPESK TIPSKLVGKP MPGFALAPGV PGKPGLTSAE
LTNGRPHLVN VFASWCVPCI AEAPQLRQLA EAGVPVYGIA IRDRPEDLAR FLERNGDPFR
AIGGDPNSSV QIALGSSGVP ETFIVDGKGI IRRQHIGAIN PEDVPGIMSA LGDAR
|
|---|
| |