| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3990 |
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| Symbol | |
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| ID | 5198708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4379359 |
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| End bp | 4381284 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583547 |
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| Product | cytochrome c assembly protein |
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| Protein accession | YP_001264473 |
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| Protein GI | 148556891 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.186912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGCCG AGGCAGGATT GGCCGCCCTC TGGCTGGCGG CGGCGCTCGC CGCGCTCCAG
CTCGCCATGG GCTGGATGGG GGTGTCGAGC CAGCGGACCG ATCTGCTCGC CGCGGTGCGG
CCGATCGCGA TCATCCAGGC GGGCCTGACC GGGATCGCCT TCCTGGTGCT GATCTACCTG
TTCGTGACGG TCGACCTGTC GGTCGCGCTG GTCGCGGCCA ACGACGCCTC GACCAAGCCG
CTGCTCTACA AATTCGCCGG CACCTGGGGG AACCACGAAG GCTCGATGCT GATGTGGGTC
ACCATCCTCG CGGTGGCGGG CGGCGCGGTC GCGATCTTCG AGCGGCGGCT CGACGAGCGC
ACGCTGATCG CGACGCTGGC GGCGCAGGCG GCGATCGGGC TCGGCTTCTA CGCCTTCCTG
CTGTTCGCCT CGAACCCCTT CGCCCGGCTC GATCCGGCGC CGGCCGAGGG GCAGGGGCTC
AACCCTCTGC TCCAGGACCC CGGCCTCGCC TTCCATCCGC CGACGCTCTA TCTCGGCTAT
GTCGGCCTGT CGGTCGCCTT CTCCTTCGCG GTCGGCGCGC TGGTGACCCG CGACGTCGGC
ACCGCCTTCG CGCGGGCGAT GCGGCCCTGG GTGCTCGGCG CCTGGATCCT GCTGACGATC
GGCATCACCG CCGGCAGCTA CTGGGCCTAT TATGAGCTCG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGC CTCGCTGATG CCCTGGCTCG CGGCGACCGC GCTGCTCCAT
TCGGTGACCG TGCTCGCGAC CCGCGAGGGG CTGCGCGCCT GGACGGTGAT GCTCGCCGTC
GTCGCCTTCT CGATGTCGAT GGTCGGCACC TTCCTGGTCC GCTCGGGCAT CCTGACCTCG
GTCCACGCCT TCGCGGTCGA TCCCGAGCGC GGCACCTTCA TCCTCGCGCT GCTCGCCATC
TACATCGGCG GCGCGCTCGC CCTGTTCGGC CTGCGCGTCG GCACGGTGCG CGAGGGATCG
CGCTTCGACG CGGTCAGCCG CGAGGGATCG CTGGTCATCA ATAACCTGCT GCTGTCGGCG
ATCCTCGGCA TCGTCCTGGT CGGCACGCTC TATCCGCTGA TCGCCGAATC GATCACCGGA
GAGAAGCTGT CGGTCGGCCC GCCCTATTTC AACAGCGCCG CCGGCCCGCT GGCGCTGATC
CTCGTCATGG TGATGGCGGC CGGGCCGATC ATGCGCTGGC GCCGCGACGA CCTGAAGGCG
ACGTTGACCC GGCTGGCGAT CCCGCTGCTG CTCTCGGCGC TGGTGCTGCT GCTCGTCATC
CTGCTGGCGC CCGGCATCCG CATCCTGCCG CTGCTCGGCC TGGTCGCCGC CGCCGGGGTC
GGCCTCGCCA GCCTCGCGCC GCTCTGGGGC CGCAACCTGC GCCGCACCCC GCTCTACATC
TGGGGCATGG TGATCGCGCA TCTCGGCATC GCTGTCAGCA TGGCCGGCAT GGCCTCCGAA
AGCGCCTTCA CCAAGGAGAC GCTGGTCGCC GCGCGGATCG GCGAGCCGCA TCGGGTCGGT
CCCTACAGCG TGCGGCTCGA CGACGTGCAG CCGGTCGCCG GGCCCAACTA TACCGCGATC
GAGGGCACCG TCACCGCGCA GCGCGGCGAC GGCAAGCCGT TCACGCTCCA CCCGCAGACG
CGCAACTTCC CCTCGCCGCA GACCGAGACC AACGAGGCGG CGATCACCAC CGTCCCCGAC
GGCCAGCTCT ACGTCGTCGT CGGCCGCGCC GACGAGCAGG GCCGCTGGCA GCTCCGCCTG
TGGTGGAAGC CGTTCGTCAC CCTGATCTGG GCCGGCGGCG GGCTGGTCGC GCTCGGCGGC
TTCCTGTCGC TGATCGGCCG CGTCCGGCGC GAGATGCGGC ATGCGCCGCC GCGGGAGTTC
CTATGA
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| Protein sequence | MIAEAGLAAL WLAAALAALQ LAMGWMGVSS QRTDLLAAVR PIAIIQAGLT GIAFLVLIYL
FVTVDLSVAL VAANDASTKP LLYKFAGTWG NHEGSMLMWV TILAVAGGAV AIFERRLDER
TLIATLAAQA AIGLGFYAFL LFASNPFARL DPAPAEGQGL NPLLQDPGLA FHPPTLYLGY
VGLSVAFSFA VGALVTRDVG TAFARAMRPW VLGAWILLTI GITAGSYWAY YELGWGGWWF
WDPVENASLM PWLAATALLH SVTVLATREG LRAWTVMLAV VAFSMSMVGT FLVRSGILTS
VHAFAVDPER GTFILALLAI YIGGALALFG LRVGTVREGS RFDAVSREGS LVINNLLLSA
ILGIVLVGTL YPLIAESITG EKLSVGPPYF NSAAGPLALI LVMVMAAGPI MRWRRDDLKA
TLTRLAIPLL LSALVLLLVI LLAPGIRILP LLGLVAAAGV GLASLAPLWG RNLRRTPLYI
WGMVIAHLGI AVSMAGMASE SAFTKETLVA ARIGEPHRVG PYSVRLDDVQ PVAGPNYTAI
EGTVTAQRGD GKPFTLHPQT RNFPSPQTET NEAAITTVPD GQLYVVVGRA DEQGRWQLRL
WWKPFVTLIW AGGGLVALGG FLSLIGRVRR EMRHAPPREF L
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