| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3982 |
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| Symbol | |
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| ID | 5197631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4371700 |
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| End bp | 4374213 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640583538 |
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| Product | DNA ligase D |
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| Protein accession | YP_001264465 |
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| Protein GI | 148556883 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.242041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGGC TCGACGAATA TAACCGCAAG CGCGACTTCG CGAAGACGCG CGAGCCGGCC
GGCACCCTGG AGACGCGCGG ACGCCACCGC TTCATCGTCC AGAAGCACGA CGCGACCCGG
CTGCACTATG ACTTCCGGCT GGAGATGGAC GGCGTGCTCA AGAGCTGGGC GGTGACGCGC
GGCCCCAGCC TCGACCCCGA CGACAAGCGG CTGGCGGTCC GCACCGAGGA CCATCCGGTG
TCCTATGGCG GTTTCGAGGG GACCATTCCC GAAGGCGAAT ATGGCGGCGG CACGGTGATG
CTGTGGGACG AGGGCAGCTG GGCGCCGATC GCGGGCAAGA GCGAGCGCGA CCTCGACAAG
GGCCATCTCC ACTTCACCCT CGACGGCCAT CGGATGAAGG GCGAATGGCT GCTCGTCCGG
ATCAAGGGGC GGCCGGGCGA GAAGCGCGAG AACTGGCTGC TCCGCAAGAT CGACGACGGC
GAGGCGGGCG GCAGCGACGA TCTCGTCGCG CACGCGCTGA CCAGCGTGAA GACCGGGCGG
ACCATGGCCC AGATCGCCGC CGACAAGGCG GGCGAATCGA GCCTGAAGGG CAAGCGCGGC
AAGGCGTTCG ACGCGATCAT GGCGAAGTCG GACGCGCACA ACGCCCGGGT GGCGCGGCGA
CCGGCCAAGG GGAAACCCTC GACCACGCCG CCGCCGGCCT TCCGCAAGCC GCAGCTCGCG
ACGCTGGTCG ATCATGTCCC GACCGGCGGC GCCTGGATCC ACGAGATCAA GTTCGACGGC
TATCGCGCCC TGGTCGCGGT GGCCGGGGAC CGGGTGAAGA TATTCACCCG CACCGGCCTC
GACTGGACCG ACCGGTTCGC GCCGGTGGCG GAGGCGGTCG CCGCGCTCGG CCTGCCGCCG
GCGCTGATCG ACGGGGAGAT CGTCAGCCTC GACGGCGCCG GCAATCCCAG CTTCTCCGCA
CTGCAAAAGG CGATCAAGGG TGAAGGCGGC GGGGGCGGCG GCTTCGAGCT GTTCGCCTTC
GACCTGCTCT CGCTCGACGG CGACGACCTC ACCGGGCTCG GCACGGTCGA GCGCAAGGCG
CGGCTCGCCG GACTGCTGCC CCGCAGCCAC CCGATGATCC ACTATGCCGA CCATGTCGTT
GGCGCGGGCG AGAAGCTGTT CGACGCGATG TGCCGCGCCG GGCAGGAGGG GATCATCTCG
AAGCGCGCCG ACGCGCGCTA CCGCGCCGGG CGGACGACCA ACTGGCTGAA GACCAAATGC
ACCCGGCGGC AGGAGTTCGT CATCATCGGC TGGAGCCGGA GCGACTCCGC CGCGCGTCCC
TTCCGCGCGC TGCTCCTCGC GCAACAGGGC GAGGACGGGC TGGTCTATGC GGGCAAGGTC
GGCACCGGCT TCGATCGCGC GACAATGGAG ATGCTGGCGG AGAAATTCGT CGCCCGCGCC
CGCAAGACCC CGCCCGCCGA CGTTCCCCGC GCCGAGGCGC GCGGCACGTC GTGGGTCCGG
CCCGACCTGG TCGCCGAGAT CGGCTTTGCC GAGTTCACGG ATGAGGGGAT ATTGCGGCAG
GCGAGCTTCA TCGGGCTGCG ATCCGACAAG GAGGCCGCCG AGGTGACAGC GGAGAAGCCC
ATGCCCGTCG AGGAAGCCGC CCGGCCCGAG GAAGCGCCGG TGAAGATCAG CAACCCCGAC
CGGGTGATCT TCCCCGAGGC GAAGGCGACC AAGGGCGATC TCGCCCGCTA TTATCAGGCG
GTCGGTCCGA TCATCCTGCC CTGGCTGGCA CACCGTCCGG TCAGCCTGGT GCGCTGCCCG
CAGGGGCGGG CGAAGCAATG CTTCTTCCAG AAGCATGATT CGGGCAGCTT CGGCGAGCAT
GTCCACCACG TCCCGATCCG GGAGAAGGAC GGCAAGACCG AGGATTATCT CTATGTCGAC
GACGTCGCCG GCATCCTCGC CTGCGTCCAG ATGGGGACGA TCGAGTTCCA TGGCTGGGGC
TCGCGGGTCG AGCGGATCGA GATGCCCGAC CGGATGATCT TCGATCTCGA TCCCGATGTC
GGCCTCGACT TCGCCGACGT TCGCACGGCG GCGAAGGACA TTCGCCGGCT GCTGTCCGAC
ATCGGCCTGA CCAGCTTCGC GATGCTGTCG GGCGGCAAGG GCGTGCACGT CGTCGTGCCG
CTGCGTCCCG AGGCGGAATG GCCGGCGGTG AAGGATTTCG CGCACCGCTT CGCCGAGGCG
ATGGCGCAGG CCGAGCCCGA CCGCTTCGTC GCGACCATGG CCAAGGCGAA GCGGGTCGGC
CGCATCTTCA TCGACTATCT GCGCAACCAG CGCGGCGCGA CCGCGGTGGT CCCCTATGGC
GCGCGGGCGC GCGAGAACGC GCCCGTGGCG GCGCCGGTGG CCTGGAACGA GCTCGACGAT
TTCGACAAGG CGGGCGCCTT CACGATCAAG GATGCCGACC GGCTGCTCAA GCGGGCGTCG
TCGAAGGCGC TCAAGGGCTG GGGCGTGGCG GACCAGGTGC TGCCGGACCT GTGA
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| Protein sequence | MARLDEYNRK RDFAKTREPA GTLETRGRHR FIVQKHDATR LHYDFRLEMD GVLKSWAVTR
GPSLDPDDKR LAVRTEDHPV SYGGFEGTIP EGEYGGGTVM LWDEGSWAPI AGKSERDLDK
GHLHFTLDGH RMKGEWLLVR IKGRPGEKRE NWLLRKIDDG EAGGSDDLVA HALTSVKTGR
TMAQIAADKA GESSLKGKRG KAFDAIMAKS DAHNARVARR PAKGKPSTTP PPAFRKPQLA
TLVDHVPTGG AWIHEIKFDG YRALVAVAGD RVKIFTRTGL DWTDRFAPVA EAVAALGLPP
ALIDGEIVSL DGAGNPSFSA LQKAIKGEGG GGGGFELFAF DLLSLDGDDL TGLGTVERKA
RLAGLLPRSH PMIHYADHVV GAGEKLFDAM CRAGQEGIIS KRADARYRAG RTTNWLKTKC
TRRQEFVIIG WSRSDSAARP FRALLLAQQG EDGLVYAGKV GTGFDRATME MLAEKFVARA
RKTPPADVPR AEARGTSWVR PDLVAEIGFA EFTDEGILRQ ASFIGLRSDK EAAEVTAEKP
MPVEEAARPE EAPVKISNPD RVIFPEAKAT KGDLARYYQA VGPIILPWLA HRPVSLVRCP
QGRAKQCFFQ KHDSGSFGEH VHHVPIREKD GKTEDYLYVD DVAGILACVQ MGTIEFHGWG
SRVERIEMPD RMIFDLDPDV GLDFADVRTA AKDIRRLLSD IGLTSFAMLS GGKGVHVVVP
LRPEAEWPAV KDFAHRFAEA MAQAEPDRFV ATMAKAKRVG RIFIDYLRNQ RGATAVVPYG
ARARENAPVA APVAWNELDD FDKAGAFTIK DADRLLKRAS SKALKGWGVA DQVLPDL
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