| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3979 |
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| Symbol | |
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| ID | 5197934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4367562 |
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| End bp | 4369160 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640583535 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001264462 |
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| Protein GI | 148556880 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.379965 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCCT TCTCCCAGCT CCTCGACGGC CTCGTCTACA CCCGCTCGCG CAATGCGAAG
CTGGCGCTGA TCGCCGATTA TCTGCGCAGG GCGCCCGATC CCGACCGGGG CTGGGCGCTG
GCGGCGCTGA CCGGCGATCT CGACCTGCCG GCGGTCAAGG CCTCGGCGAT CCAGGCGATC
GTCGCCGAAC GGGTCGATCC GCTGCTGTTC CTGATGAGCC GCGACTATGT CGGGGACCTC
GCCGAGACGG TCGCGCTGAT CTGGCCCAAG CGGATCGACC AGCCCGCCGA GATCGACGAC
GGCTCGCTCG GCCTCGCGGC GGTGGTCGAT CGGCTGATGC GGCTCGGCCG GGCCGAGGCG
CCGGCCGCGC TGAGCGAGAT GCTCGACCAT CTCGACGCGA GCGGCCGCTT CGCCCTGCTC
AAGCTCGCGA CCGGGGGCTT GCGGGTCGGC ATCTCGGCGC GGCTCGCCAA GACCGGCTTC
GCCCAGGCCT TCGGCCTCGA CGTCGACGCG GTCGAGGAGG TGTGGCACGC GCTGCGGCCC
CCCTATGCCG AGCTGTTTGC CTGGGGGCTG GGCGGCGAAC GGCCCGATCC GCGCGGCACG
CCCTTCTTCC GGCCGTTCAT GCTCGCCCAT CCGCTGGAGG CGGAGACGCT CGACCTCGCC
GACTATGCCG CCGAATGGAA ATGGGACGGC ATCCGCGTCC AGATCGTCGG CACCGGCCAG
GCGGTGCGGC TGTACAGCCG CGCGGGCGAC GACATCACCG CGACCTTTCC CGACATCGCC
GCGGCCGCGG ACGGGATCGA CGCGGTGCTC GACGGCGAGA TGCTGGTGCG GGGCGAAGCG
CAGGGCGCGG CCGAGCATGG CGGGTCGGCC GCTTCGTTCA ACGCCTTGCA GCAGCGGCTC
GGGCGCAAGA ACGTCTCTTC GAGGATGCTC GCCGACTATC CTGCCTTCGT CCGCCTCTAC
GATCTGCTGA TCGACGGCGG CGACGATCTG CGCGCGCTGC CCTGGGAGGC GCGGCGCGCG
CGGCTCGAAG CCTTTGCCGC GCGGCTCGAT CCGGCGCGCT TCGATCTGTC GGCGGTGATC
GCGGCGCGCG ACTTCGACGA GCTCGCCGAG ACCCGCGCCG GCGCCCGCGA CGCGGCGATC
GAGGGGGTGA TGCTCAAGCG CCGCGACAGC CCCTATGTCG CCGGCCGCCG CACCGGCCTC
TGGTACAAGT GGAAGCGCGA CCCGCTGACC GTCGACTGCG TGATGATGTA CGCCCAGCGC
GGCCATGGGA AGCGGTCGAG CTTCTATTCG GACTATACCT TCGGCTGCTG GTCGGAGGAG
GGCGAGCTGC TGCCGGTCGC CAAGGCTTAT TCGGGCTTCA CAGACGAGGA GCTGAAATGG
CTCGATGGCT TCGTCCGCAA CCACACGGTC AACCGTTTCG GCCCGGTGCG CGAGGTGGAG
AAGCTACTGG TCGTCGAACT GGCCTTCGAC AGCATCCACG ACAGCCGGCG CCACAAGTCG
GGCGTGGCGA TGCGCTTCCC GAGGATCGCC CGCATCCGCC GCGACAAGCC CCCCGGGGAG
GCCGACACGA TCGAGACGCT GAGGAAGCTG ATCGTGTGA
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| Protein sequence | MHAFSQLLDG LVYTRSRNAK LALIADYLRR APDPDRGWAL AALTGDLDLP AVKASAIQAI
VAERVDPLLF LMSRDYVGDL AETVALIWPK RIDQPAEIDD GSLGLAAVVD RLMRLGRAEA
PAALSEMLDH LDASGRFALL KLATGGLRVG ISARLAKTGF AQAFGLDVDA VEEVWHALRP
PYAELFAWGL GGERPDPRGT PFFRPFMLAH PLEAETLDLA DYAAEWKWDG IRVQIVGTGQ
AVRLYSRAGD DITATFPDIA AAADGIDAVL DGEMLVRGEA QGAAEHGGSA ASFNALQQRL
GRKNVSSRML ADYPAFVRLY DLLIDGGDDL RALPWEARRA RLEAFAARLD PARFDLSAVI
AARDFDELAE TRAGARDAAI EGVMLKRRDS PYVAGRRTGL WYKWKRDPLT VDCVMMYAQR
GHGKRSSFYS DYTFGCWSEE GELLPVAKAY SGFTDEELKW LDGFVRNHTV NRFGPVREVE
KLLVVELAFD SIHDSRRHKS GVAMRFPRIA RIRRDKPPGE ADTIETLRKL IV
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