| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3968 |
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| Symbol | |
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| ID | 5200866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4354867 |
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| End bp | 4357530 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640583524 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001264451 |
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| Protein GI | 148556869 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.552435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.160196 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGGG TACGCGGAAG ATCGGCCTTC GCGATCGAAG GGCGTGGCGA CGGCGAGGAT
GGCGCCGATG CGGGGCGCCT GCGCTTCCTG CGCGGCCTTT TCCCGCGCGG CGACGCGCAC
GACCGGCAAT CGGTCGCCAA CCGCGTGCGC ATGGCGCTCG ACGCCCTGCC GCTGCTGCTG
CTCGCCGACC TGATCGTCGC CGCCGGCCTC TGGCTGCTGG GCCGCCCTGC CTTGGGCGGC
GCCGGCTTCT GGATGATCGC CGCGCCGCTG CTGGCGATGC TCGTGGCGGG CGGGGCGATC
CGGCTGGTCG CGCGGCGCGG GAAGGGGGCC ACCGCCCCCG AACGGATGCA CGGCTTCGTC
GCGCTGCTCG GGCTGGTCCA GGGGTTCGGC TGGTCGGTCT GGCTGCTTGC CTCGGCGACC
GGCCTCGCGC CGTCGCGCTG GGCGCTCGCG GCGGTCGCGC ATGGCGGGCT GCTGGTCGTC
ACCACGCTCG TCTTCGCGCC GGTGCCGACC GCCGCGCTGG CGCTGTGGCT CTGCCTGGCG
ATCGCGGCCA CCGTCGCGCT CGGGCCCTGG GCGGTGCTGG CCCTGTTGGT TCCCCTGCTC
GCCGTCGCGG TCGTCATGCT CGGCGGCATA TCGGAGCGCA GCTATGTCGC GTCGCGCCGC
TGGCTGGCCC GCGCCGCCGT GGCGCTGAAG GCGTCGCTGC TGCTCGGCGA GTTCGAGGAG
AGCGGGCGCG GCTGGTTCTG GGAAACCGAC GATCGCGGCC TGATCAGCTA TATCTCGCCG
CAGATCGCGG CGGCGCTCGG CCTCGCCGCC GATCGGCTGC TCGGCACGCC GATGACCGGG
CTGGTGCTGC ACGAGGCGGG CGACGGCGCC GGTTCCGGCG CGGGCGAGAG GACGCTGGGC
TTCCACCTCG CGACCCGGCT CGCCTTCTCC GAGATCGCGG TGCGCGCGGC GGGTGACGAC
GTGCGCTGGT GGTCGCTGTC GGGCCGCCCG GCCTTCGACG AATATGGCAA TTTCCTGGGC
TTCCGGGGCA GCGGCACCGA CCTGACCGAG ATGCGCCGGT CGGAGGCCGA GGTGAAGCGC
CTCGCCAGCT ATGATTCGCT GACCGGCCTG CCCAACCGCA TCCTGATGCG CCGCACCCTC
GACGAATCGC TGCGCGACAT CGCCGGCCGG CCCAAGCGCG CGGCGCTGTT CATGCTCGAT
CTCGACCGCT TCAAGATGGT CAACGACACG CTCGGCCATC CGGTCGGCGA CGCCCTGCTG
CGTCAGGTCG CCGTGCGGCT TCAGCGCGTC GTCCAGCAAG ACGGGCAGGT CGGGCGGCTC
GGCGGCGACG AGTTCAACGT CGTCCTGCCC GGCATCGTCG AACGGAACCG CCTCGCCACG
CTCGCCTCGG CGATCATCCA GCAGCTGTCC CAGCCCTATC TGATCGACGG GGCGCATGTC
TCGATCGGCG CCTCGATCGG CATCGCCATC GCGCCCGACG ACGGCGCCAC CGCCGACGCG
CTGGTCCGCA ACGCCGATCT CGCCCTCTAC GCGGCCAAGG CCGACGGCAA GGGCGTCCAC
CGCTTCTACG AGCCGGAGAT GCACGCCAGC GCCAAGGACC GGCGCCTGCT CGAAATGGAC
CTGCGCGGGG TGATGAGCGA GAGCGGGCTC CACCTCGTCT ACCAGCCGGT CGTCGATGCC
GGGAGCGAGG CGATCGTCTG CTTCGAGGCG CTGGTCCGCT GGGACCATCC GACGCGGGGC
GCCGTCTCTC CTTCGGATTT CATCCCGGTG GCCGAAGAGA TCGGCCTGAT CCCGCAGATC
GGCGAATGGG TGCTGCGCAC CGCCTGCCTG GAGGCGGCGA ACTGGCCCGA TCCGGTGCGG
GTCGCCGTCA ACATCTCGCC GATCCAGTTC GCCAATCCGT CGCTGCCCGG GATCGTCCTG
TCGGCGCTCG CCGCCGCGCA GCTGCCGCCG CACCGGCTGG AGCTGGAGAT CACCGAGGGC
GTGTTCCTCA ACGACGATGC CGCGACCGAT GCGATGTTCG CCCGGCTCAA GGCGATCGGC
GTCCGCTTCG CGCTCGACGA TTTCGGCACC GGCTATTCGT CGCTCGGCTA TCTGAAGAAG
GCGCCGTTCA ACAAGATCAA GATCGACCAG AGCTTCGTGC GCGGCGCGGC GGTTCCCGGC
AACCGCAACG CGGCGATCAT CCGTGCGATC GTGGCGCTCG CCGAGAGCCT GGAGATGGAG
ACGACCGCCG AGGGGGCGGA GACGCCCGAC GAACTGGCGC TGATCCGCTC GCTCGGCTGC
AGCCACATCC AGGGCTATAT CTTCGGCCGG CCGATGCTGT CCGACGAGGC GCGCGCGCGG
GTCGCCGGAT CGGGCAAGCT CGCCATGCCG GGCCTGCTCG TGACCCGCGA TCCCCGGGTC
GCGGTGCTGC GCTCGGCGAC GGTGCGCAGC GCGCGCGGCG TCGAGCCGGC CCGCATCCGC
AACCTGTCGC GATCGGGGGC GATGATCGAA TGCGCCATCC CGTTCCGCCC CGGCGAGGCG
GTCACCCTCG ACCTCGGCAA TGGCGGGCCG GTCGACGGCG TGATCCGCTG GGCCGACGAG
GACCGCATCG GCGTCGCCTT CGACGAGCCG ATCGAAGCCG ACCAGATGGC CCCGCAAAGG
ATGGTCCGGG CAGCAACCCT CTAA
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| Protein sequence | MRRVRGRSAF AIEGRGDGED GADAGRLRFL RGLFPRGDAH DRQSVANRVR MALDALPLLL
LADLIVAAGL WLLGRPALGG AGFWMIAAPL LAMLVAGGAI RLVARRGKGA TAPERMHGFV
ALLGLVQGFG WSVWLLASAT GLAPSRWALA AVAHGGLLVV TTLVFAPVPT AALALWLCLA
IAATVALGPW AVLALLVPLL AVAVVMLGGI SERSYVASRR WLARAAVALK ASLLLGEFEE
SGRGWFWETD DRGLISYISP QIAAALGLAA DRLLGTPMTG LVLHEAGDGA GSGAGERTLG
FHLATRLAFS EIAVRAAGDD VRWWSLSGRP AFDEYGNFLG FRGSGTDLTE MRRSEAEVKR
LASYDSLTGL PNRILMRRTL DESLRDIAGR PKRAALFMLD LDRFKMVNDT LGHPVGDALL
RQVAVRLQRV VQQDGQVGRL GGDEFNVVLP GIVERNRLAT LASAIIQQLS QPYLIDGAHV
SIGASIGIAI APDDGATADA LVRNADLALY AAKADGKGVH RFYEPEMHAS AKDRRLLEMD
LRGVMSESGL HLVYQPVVDA GSEAIVCFEA LVRWDHPTRG AVSPSDFIPV AEEIGLIPQI
GEWVLRTACL EAANWPDPVR VAVNISPIQF ANPSLPGIVL SALAAAQLPP HRLELEITEG
VFLNDDAATD AMFARLKAIG VRFALDDFGT GYSSLGYLKK APFNKIKIDQ SFVRGAAVPG
NRNAAIIRAI VALAESLEME TTAEGAETPD ELALIRSLGC SHIQGYIFGR PMLSDEARAR
VAGSGKLAMP GLLVTRDPRV AVLRSATVRS ARGVEPARIR NLSRSGAMIE CAIPFRPGEA
VTLDLGNGGP VDGVIRWADE DRIGVAFDEP IEADQMAPQR MVRAATL
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