Gene Swit_3968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3968 
Symbol 
ID5200866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4354867 
End bp4357530 
Gene Length2664 bp 
Protein Length887 aa 
Translation table11 
GC content72% 
IMG OID640583524 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001264451 
Protein GI148556869 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.552435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.160196 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGGG TACGCGGAAG ATCGGCCTTC GCGATCGAAG GGCGTGGCGA CGGCGAGGAT 
GGCGCCGATG CGGGGCGCCT GCGCTTCCTG CGCGGCCTTT TCCCGCGCGG CGACGCGCAC
GACCGGCAAT CGGTCGCCAA CCGCGTGCGC ATGGCGCTCG ACGCCCTGCC GCTGCTGCTG
CTCGCCGACC TGATCGTCGC CGCCGGCCTC TGGCTGCTGG GCCGCCCTGC CTTGGGCGGC
GCCGGCTTCT GGATGATCGC CGCGCCGCTG CTGGCGATGC TCGTGGCGGG CGGGGCGATC
CGGCTGGTCG CGCGGCGCGG GAAGGGGGCC ACCGCCCCCG AACGGATGCA CGGCTTCGTC
GCGCTGCTCG GGCTGGTCCA GGGGTTCGGC TGGTCGGTCT GGCTGCTTGC CTCGGCGACC
GGCCTCGCGC CGTCGCGCTG GGCGCTCGCG GCGGTCGCGC ATGGCGGGCT GCTGGTCGTC
ACCACGCTCG TCTTCGCGCC GGTGCCGACC GCCGCGCTGG CGCTGTGGCT CTGCCTGGCG
ATCGCGGCCA CCGTCGCGCT CGGGCCCTGG GCGGTGCTGG CCCTGTTGGT TCCCCTGCTC
GCCGTCGCGG TCGTCATGCT CGGCGGCATA TCGGAGCGCA GCTATGTCGC GTCGCGCCGC
TGGCTGGCCC GCGCCGCCGT GGCGCTGAAG GCGTCGCTGC TGCTCGGCGA GTTCGAGGAG
AGCGGGCGCG GCTGGTTCTG GGAAACCGAC GATCGCGGCC TGATCAGCTA TATCTCGCCG
CAGATCGCGG CGGCGCTCGG CCTCGCCGCC GATCGGCTGC TCGGCACGCC GATGACCGGG
CTGGTGCTGC ACGAGGCGGG CGACGGCGCC GGTTCCGGCG CGGGCGAGAG GACGCTGGGC
TTCCACCTCG CGACCCGGCT CGCCTTCTCC GAGATCGCGG TGCGCGCGGC GGGTGACGAC
GTGCGCTGGT GGTCGCTGTC GGGCCGCCCG GCCTTCGACG AATATGGCAA TTTCCTGGGC
TTCCGGGGCA GCGGCACCGA CCTGACCGAG ATGCGCCGGT CGGAGGCCGA GGTGAAGCGC
CTCGCCAGCT ATGATTCGCT GACCGGCCTG CCCAACCGCA TCCTGATGCG CCGCACCCTC
GACGAATCGC TGCGCGACAT CGCCGGCCGG CCCAAGCGCG CGGCGCTGTT CATGCTCGAT
CTCGACCGCT TCAAGATGGT CAACGACACG CTCGGCCATC CGGTCGGCGA CGCCCTGCTG
CGTCAGGTCG CCGTGCGGCT TCAGCGCGTC GTCCAGCAAG ACGGGCAGGT CGGGCGGCTC
GGCGGCGACG AGTTCAACGT CGTCCTGCCC GGCATCGTCG AACGGAACCG CCTCGCCACG
CTCGCCTCGG CGATCATCCA GCAGCTGTCC CAGCCCTATC TGATCGACGG GGCGCATGTC
TCGATCGGCG CCTCGATCGG CATCGCCATC GCGCCCGACG ACGGCGCCAC CGCCGACGCG
CTGGTCCGCA ACGCCGATCT CGCCCTCTAC GCGGCCAAGG CCGACGGCAA GGGCGTCCAC
CGCTTCTACG AGCCGGAGAT GCACGCCAGC GCCAAGGACC GGCGCCTGCT CGAAATGGAC
CTGCGCGGGG TGATGAGCGA GAGCGGGCTC CACCTCGTCT ACCAGCCGGT CGTCGATGCC
GGGAGCGAGG CGATCGTCTG CTTCGAGGCG CTGGTCCGCT GGGACCATCC GACGCGGGGC
GCCGTCTCTC CTTCGGATTT CATCCCGGTG GCCGAAGAGA TCGGCCTGAT CCCGCAGATC
GGCGAATGGG TGCTGCGCAC CGCCTGCCTG GAGGCGGCGA ACTGGCCCGA TCCGGTGCGG
GTCGCCGTCA ACATCTCGCC GATCCAGTTC GCCAATCCGT CGCTGCCCGG GATCGTCCTG
TCGGCGCTCG CCGCCGCGCA GCTGCCGCCG CACCGGCTGG AGCTGGAGAT CACCGAGGGC
GTGTTCCTCA ACGACGATGC CGCGACCGAT GCGATGTTCG CCCGGCTCAA GGCGATCGGC
GTCCGCTTCG CGCTCGACGA TTTCGGCACC GGCTATTCGT CGCTCGGCTA TCTGAAGAAG
GCGCCGTTCA ACAAGATCAA GATCGACCAG AGCTTCGTGC GCGGCGCGGC GGTTCCCGGC
AACCGCAACG CGGCGATCAT CCGTGCGATC GTGGCGCTCG CCGAGAGCCT GGAGATGGAG
ACGACCGCCG AGGGGGCGGA GACGCCCGAC GAACTGGCGC TGATCCGCTC GCTCGGCTGC
AGCCACATCC AGGGCTATAT CTTCGGCCGG CCGATGCTGT CCGACGAGGC GCGCGCGCGG
GTCGCCGGAT CGGGCAAGCT CGCCATGCCG GGCCTGCTCG TGACCCGCGA TCCCCGGGTC
GCGGTGCTGC GCTCGGCGAC GGTGCGCAGC GCGCGCGGCG TCGAGCCGGC CCGCATCCGC
AACCTGTCGC GATCGGGGGC GATGATCGAA TGCGCCATCC CGTTCCGCCC CGGCGAGGCG
GTCACCCTCG ACCTCGGCAA TGGCGGGCCG GTCGACGGCG TGATCCGCTG GGCCGACGAG
GACCGCATCG GCGTCGCCTT CGACGAGCCG ATCGAAGCCG ACCAGATGGC CCCGCAAAGG
ATGGTCCGGG CAGCAACCCT CTAA
 
Protein sequence
MRRVRGRSAF AIEGRGDGED GADAGRLRFL RGLFPRGDAH DRQSVANRVR MALDALPLLL 
LADLIVAAGL WLLGRPALGG AGFWMIAAPL LAMLVAGGAI RLVARRGKGA TAPERMHGFV
ALLGLVQGFG WSVWLLASAT GLAPSRWALA AVAHGGLLVV TTLVFAPVPT AALALWLCLA
IAATVALGPW AVLALLVPLL AVAVVMLGGI SERSYVASRR WLARAAVALK ASLLLGEFEE
SGRGWFWETD DRGLISYISP QIAAALGLAA DRLLGTPMTG LVLHEAGDGA GSGAGERTLG
FHLATRLAFS EIAVRAAGDD VRWWSLSGRP AFDEYGNFLG FRGSGTDLTE MRRSEAEVKR
LASYDSLTGL PNRILMRRTL DESLRDIAGR PKRAALFMLD LDRFKMVNDT LGHPVGDALL
RQVAVRLQRV VQQDGQVGRL GGDEFNVVLP GIVERNRLAT LASAIIQQLS QPYLIDGAHV
SIGASIGIAI APDDGATADA LVRNADLALY AAKADGKGVH RFYEPEMHAS AKDRRLLEMD
LRGVMSESGL HLVYQPVVDA GSEAIVCFEA LVRWDHPTRG AVSPSDFIPV AEEIGLIPQI
GEWVLRTACL EAANWPDPVR VAVNISPIQF ANPSLPGIVL SALAAAQLPP HRLELEITEG
VFLNDDAATD AMFARLKAIG VRFALDDFGT GYSSLGYLKK APFNKIKIDQ SFVRGAAVPG
NRNAAIIRAI VALAESLEME TTAEGAETPD ELALIRSLGC SHIQGYIFGR PMLSDEARAR
VAGSGKLAMP GLLVTRDPRV AVLRSATVRS ARGVEPARIR NLSRSGAMIE CAIPFRPGEA
VTLDLGNGGP VDGVIRWADE DRIGVAFDEP IEADQMAPQR MVRAATL