| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3920 |
|---|
| Symbol | |
|---|
| ID | 5196243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4303931 |
|---|
| End bp | 4304392 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640583476 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_001264403 |
|---|
| Protein GI | 148556821 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.264778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGG AAGGCGACAA GGCCCCCGAT GTGACGCTCG ACCTGCCCGA CGGCAGCAAG
ACGAGCGTCG CCGAACAGGC GGGCAAGATC CTCGTCCTCT ATTTCTATCC GAAGGACGAC
ACGCCGGGCT GCACGACCGA GGCGCAGGGG TTCACCGCGC TGGCCGACGA TTTCGCCAAG
GCGGGCGCGA CGATCATCGG CGTGTCGAAG GACAGCGCCG CGCGCCACCA GAAGTTCATC
GACAAATATG GCCTCAAGAT CCGCCTCGCC TCCGATGGCG ACGGCAGCGT CTGCGAGGCG
TTCGGCACCT GGATCGAGAA GTCGCTCTAT GGCCGCCAAT ATATGGGCAT CGACCGGGCG
ACCTTCCTGA TCGGCAAGGA CGGCACCATC GCGCGCATCT GGCGCAAGGT GAAGGTCAAG
GGCCATGCCG AGGACGTGCT GGCCGTCGCG AAGACGCTAT AG
|
|---|
| Protein sequence | MLKEGDKAPD VTLDLPDGSK TSVAEQAGKI LVLYFYPKDD TPGCTTEAQG FTALADDFAK
AGATIIGVSK DSAARHQKFI DKYGLKIRLA SDGDGSVCEA FGTWIEKSLY GRQYMGIDRA
TFLIGKDGTI ARIWRKVKVK GHAEDVLAVA KTL
|
|---|
| |