Gene Swit_3901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3901 
Symbol 
ID5199812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4285313 
End bp4287298 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content71% 
IMG OID640583457 
Productintegral membrane sensor hybrid histidine kinase 
Protein accessionYP_001264384 
Protein GI148556802 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0390399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACGT TCTCTCCCGA CGCCTTGAAG CGGGGTCTGT CCCCGGCGAC GCAGCGTGCG 
CTCGCGGCAG CGGTCCTCGC CCTCACGGCG CTGGGGCTGC TTGTCGCCGT CGTCATGATG
GTCGCGCAAT CGAACGCCGC GCGCGACGAT GCGCTGCGGC GGGAGCAGCA CAGCTACGAC
ATCATGGTGC TGACCCGTTC GCTCGATGCG TCGCTCGCGC GCTCGGAAGC CGCGCTCGGC
CGCTATGTGG TGAACGGCGA CCGCAAGGTC GGCACCATCT ATTATGACGA ATGGCGCCGG
GCGATGAGCC AGCTCCGCCA GCTCGACAGG CTGGTCGGCG AGCAGCCCGA CCAGGTGAAG
CTGGTCCGCA AGCTCGAAGG GCTGGCGAGC CAACGCGACA AGGAACTGAC CGACGCGGCG
TCCTTCGCCA ATGTCGGCAA GGGCTGGTAC GCGATCGGCA TGTTCAACAA GGCCGGCGAA
TCCCCCAATG TCGTCGCCAT ATCCGCGACC CTCGAACAGA TCGCCGCGAA CGAGCGGACC
CGCCTTGGCG TCCGGTCCGA GGCGACCTTC TTCTCGGCCG AGCGGGCCAA CGGCTTCGCG
ACGCTGCTGT CGGTCCTCGG CCTCGTCCTG ATGGGGCTCG CCATCCTGCT CGGCTGGCTG
GTCGCGGCCG CCGCCGCGCA GCGCGCCCAT GCCGCCGAAC AGGCCGAGGC CGAGGCCGAC
CGCGCCTCGC AGCTCGAGGC CGCCGTCGCC GAACGGACGC GCGAGCTGCG CGAGGCCAAC
GACCGGCTGC GCGAGGAGAG CGAGACGCGC GTCCGCGCCG AGGCGCAGCT CGCCCAGGCG
CAGAAGATGG AGGCTGTCGG GCAGCTCACC GGCGGCATCG CGCACGACTT CAACAATATG
CTGGCCGTGG TGGTCGGCGG GCTCGACCTC GCCCGGCGCA AGATCGCCCA GCGCCCGGCC
GAGGCGGGAG TCCATCTCGA CGGCGCGATG GAAGGGGCCG ACCGCGCGGC GGCGCTCACC
CGCCGGCTGC TGTCCTTCGC CCGCGCCGAA CCCTTGCTGC CCGATGCGGT GCTGCCGGCC
AAGCTGGTCG CAGGCATGAA CGTCCTGCTC GACCGGACCC TCGGCGAACG CGTCACCGTC
CAGGTCGACA CGGCGGGCGC GCACTGGCCG ATCTGGGCCG ATGCGCACCA GCTCGAAAAT
GCGATCCTCA ACCTCGCGGT CAACGCCCGC GACGCGATGG AGGGGGCGGG GCGGCTCGAC
ATCTCGGTCG CCGACGTCGC GGTCGCCGCG GGCGATTCAG CCGACGTCAA GCCGGGCGAC
TATGTCCGGA TCAGCGTCGC CGACACCGGC TGCGGCATGT CCCCGCAGGT GCTGGCCCGC
GCCTTCGAGC CCTTCTTCAC GACCAAGCCG GTCGGCAAGG GCACCGGCCT CGGCCTCAGC
CAGATCTTCG GCTTCGTGCG GCAGTCGCAC GGCGACGTCC GCGTCGATTC GGAAGTGGGC
AAGGGCACGA CCATCTCGCT CTACCTGCCG CGCTATCATG GCGTGGCGGC GGAACGGAAC
GCCGACGCCG CCGACCGGGC CGCGCGGCCC AAGGTCGGGT CGCTCTCGAT CCTGCTGGTC
GAGGACGATC CCCGCGTCCA GGCGTCGACC CGCGCGGGGC TGACCGAGCT CGGCCACATC
GTCCGCGCCT GCGCCTCGGG CGAGGAGGCG CTGGCGATGC TGGCGGAGGA TGGCGGCGTC
GACCTCGTCC TGACCGACGT GATGATGCCG GGGATGACCG GGCCCGAGCT GATCGCCGCG
ATCAGTCGCG ACTATCCCGA GATCGCCGCG CTGTTCGTCA CCGGCTATGT CGGCGAAGCC
GGCCAGAGCG ATGATTTCGC GGGCTATGAG GTGCTCCGCA AGCCCTTCAC CATCGCCGCG
CTCGGCAACG CCGTCGCCCG CGCGATCGAT CGTCGCGGCA AGCCGCCGAC CTCCCAAGCC
GCCTGA
 
Protein sequence
MATFSPDALK RGLSPATQRA LAAAVLALTA LGLLVAVVMM VAQSNAARDD ALRREQHSYD 
IMVLTRSLDA SLARSEAALG RYVVNGDRKV GTIYYDEWRR AMSQLRQLDR LVGEQPDQVK
LVRKLEGLAS QRDKELTDAA SFANVGKGWY AIGMFNKAGE SPNVVAISAT LEQIAANERT
RLGVRSEATF FSAERANGFA TLLSVLGLVL MGLAILLGWL VAAAAAQRAH AAEQAEAEAD
RASQLEAAVA ERTRELREAN DRLREESETR VRAEAQLAQA QKMEAVGQLT GGIAHDFNNM
LAVVVGGLDL ARRKIAQRPA EAGVHLDGAM EGADRAAALT RRLLSFARAE PLLPDAVLPA
KLVAGMNVLL DRTLGERVTV QVDTAGAHWP IWADAHQLEN AILNLAVNAR DAMEGAGRLD
ISVADVAVAA GDSADVKPGD YVRISVADTG CGMSPQVLAR AFEPFFTTKP VGKGTGLGLS
QIFGFVRQSH GDVRVDSEVG KGTTISLYLP RYHGVAAERN ADAADRAARP KVGSLSILLV
EDDPRVQAST RAGLTELGHI VRACASGEEA LAMLAEDGGV DLVLTDVMMP GMTGPELIAA
ISRDYPEIAA LFVTGYVGEA GQSDDFAGYE VLRKPFTIAA LGNAVARAID RRGKPPTSQA
A