| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3886 |
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| Symbol | |
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| ID | 5200286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4274392 |
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| End bp | 4275183 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583441 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001264369 |
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| Protein GI | 148556787 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGGC TTGACGGAAA AGTCGCGATC GTCACGGGAG GCGCCGCCTC GATCGGCGCG
GCGATCGTGC GCAAGCTGCA CGCGGAAGGC GCGCGGGTGG CGATCGCCGC GCGCAGCGCC
GGCAAGGGGG ACGCGCTGGC CGCGGAACTG GGCGACGGCG CGCTGTTCGT CCCCACCGAC
ATCACCGACG ACGCGGCGCT CGCAAGGCTC GTCGCGCGAA CGGTCGACGC CTTCGGCCGG
CTCGACATCG TCGTCAACAA TGCCTGCTCC TATGGCGACG ATGGCGCGGC CACGGCGCGC
GGCACATGGC TCGACACGCT CAACGTCAAT GCCGTATCGG CCGCCATCCT CGGCGAGACT
GCCCGCCCCC ATCTGAAGAC GGCGCGCGGC AACATCGTCA ACATCGGCTC GATCTCGGGC
CGGTTCGCGC ATGTCGGCCG CTGGGCCTAT CCGGTGTCCA AGGCGGCGCT CGCCCATCTG
ACGCGCGCGC AGGCGATGGA CTATGCGGCG GACGGCATCC GGGTGAACAT GGTCACGCTG
GGGCATATCT GGTCTGACCC GTTCGACGGC CTGACCGGCG GCGATCGGGC GCATGCCGAC
GACGTCGCGC GCGACCTCAA CCTGATCGGT CGCGTTGCCG ATGCGGGCGA AGTGGCGAAC
GTCGTCGCCT TCGTCGCCTC CGACGCGGCG AGCTACATGA CCGGCAGCGA GACGTCGGTC
GACGGCGGCT ACGGCATGAT GGGGCCGGAG CGCCGCGTGC CGTTGATGCC GCTGCTGTCG
GGCCAGGCCT GA
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| Protein sequence | MARLDGKVAI VTGGAASIGA AIVRKLHAEG ARVAIAARSA GKGDALAAEL GDGALFVPTD
ITDDAALARL VARTVDAFGR LDIVVNNACS YGDDGAATAR GTWLDTLNVN AVSAAILGET
ARPHLKTARG NIVNIGSISG RFAHVGRWAY PVSKAALAHL TRAQAMDYAA DGIRVNMVTL
GHIWSDPFDG LTGGDRAHAD DVARDLNLIG RVADAGEVAN VVAFVASDAA SYMTGSETSV
DGGYGMMGPE RRVPLMPLLS GQA
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