Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3857 |
Symbol | |
ID | 5197977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4241980 |
End bp | 4244211 |
Gene Length | 2232 bp |
Protein Length | 743 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583412 |
Product | TonB-dependent receptor |
Protein accession | YP_001264340 |
Protein GI | 148556758 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCAGA GGACCAAGGC CCTGCGGCTC CTCGCCGCCG CAACCGCCCT CACCACCGTC GCGCTGCCGC AGGCCGGCTT CGCCCAGGCC ACGGAGACCG CCGCCGCCGA GGCGGCCGAC GCCGGCGACA TGGGCGAGAT CGTCGTCACC GCCCGGCGCC GCGAGGAAAG CCTGATCGAC GTGCCGATCT CGGTGTCGGC GATCAGCGGC GAGGCGCTGT CGCGCACCGG CGCGATCGAC ATCACCACGC TGCAGGACAA GACCCCGAAC ATGACCCTGC AGGTCGCGCG CGGATCGAAC AGCACGCTGA TCGCCTTCAT CCGCGGCATC GGCCAGCAGG ACCCGGTGTG GGGCTTCGAG CCCGGCGTCG GCCTCTATGT CGACGACGTC TACATCGCCC GCCCGCAGGG CGCGGTGCTC GACATCTTCG ACATCGACCG GGTCGAGGTG CTGCGCGGGC CGCAGGGCAC GCTCTACGGC CGCAACACGA TCGGCGGCGC GATCAAGTAT GTCACCCGCC GCCTCGGCCA TGATTTCGAG GCGAAGGTCC GCGCCTCCTA TGGCAGCTAC AACCAGCGCG AGATCGTCGC GTCGGTGACG GTGCCGCTCA CCGACACCTT CTCGATCGGC GGCGCGGTCG CCTATTACAA GCGCGACGGC TTCGGCAAGA ACCTGTTCAC CGGCGCCGAG CATTACAACA AGGACGTGCT CGCCGGCCGC GTCTCGGCCG AATGGACGCC GACCGACCAG CTCTCGGTCC GCCTCGCCGC CGACGAGACC CGCGACAATT CGAACCCGCG CCACGGCTAT CGCCTGCTGC CCAATGGCGG GCTGCCCGAT TTCAACCCGA TCGGCGACGT CTACGACACC CGCGCGGGCG TCGGCGACGA CAACAAGGTC GTGACCAAGG GCGTCTCGGG CACGATCGAA TATGAGGCGT CGGACCTGCT GACCCTCAAG TCGATCACCG CCTATCGCAA GGGCCATACC GACACGGTGA TCGATTTCGA CGGCACGCCG GGCCCGGTGC TCGACATCCC GTCCTTCTAC AAGGACCACC AGTTCACCCA GGAATTCCAG GCGCTGCTGC AAAGCGACCG GGTGCAGGGC GTGTTCGGCC TCTATTATCT CAACGGCTCG GCCTCGGGCG CGTTCGACAC GGTGATCGGC AACGCCAACC TGACGACGCT GACCTCGGGC GACGTCGACA CCAAGTCCTA TGCCGCCTTC GCCGACGTCT CGGTCAAGCT CAGCGACCAG TTCTCGGTCT CGGTCGGCGG CCGCTACACC AGCGACAAGC GCGAGGGCAC CGTGTTCCGC GCCGACTATC TCGGCCTGCG CTCGCCGCTG TTCGGCCGGC CGACGGCGGT GCCGTTCCGC ATCCGCACCG ACTACACCAA CAGCCGCACC GACAAGAAGT TCACGCCGCG CCTGTCGCTC AGCTACAAGC CGGTCGAGGA CGTCAACCTC TATGCGTCCT GGTCGCGCGG CTACAAGTCG GGCGGCTTCG ATCCGCGCGG CGACGCCATC TTCACGCCGG GCACCGTCGA CGGCTACAAG CCCGAGACCG TCACCGCCTA TGAGGCCGGC ATGAAGGGCG CCTTCCTGAA CCGCACCCTG TTCGTCAACG TCGCGGGCTT CTATTCCGAC TATAAGGACC AGCAGGTCAC GACCCAGTTC CTGTCGGGCA CCACGGTCGT CTCGTCGGTC GACAATGTCG GCAAGTCGCG CATCTACGGC TGGGAGCTCG AGCTGCGCGC CGTGCCCGAC CGCGATTTCC AGGTGCAGGC GTCGGTCGGC TACACCAACG CCAAGTTCAA GGAGTTCCTG ACCCTCGATC CGCTGACCCT CAAGGTCCGC GACTTCGCCG ACGAGCGGGT GTTCCAGAAC ACGCCGAAAT ACACCGCCAA CGTCTCGGCG ACGCTGGGCC ATGATTTCGA CGGGCTCGGC CGCGTCACGA TCACCCCGGC GCTCTCCTTC CGCAGCGGCT ATTCGCTGTT CGAGGTGCCG AACCCGGTGC TCGACCAGAA GGCCTATGAG CTGGTCGACC TGTCGATCGT CTGGACCTCG CCCGACAAGC GCTTCTCGCT CTCCGGCCAT GGCCGCAACC TGTTCGACCG CAAGTATCGC GTCGGCGGCT ATAATTTCCC GGGCGCGCTG ACCGGCAATT CGGTGATCGG CTTCTACGGC CCGCCGCGCA CCTTCACCGT CACCGGCGAG GTGCGTTTCT GA
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Protein sequence | MIQRTKALRL LAAATALTTV ALPQAGFAQA TETAAAEAAD AGDMGEIVVT ARRREESLID VPISVSAISG EALSRTGAID ITTLQDKTPN MTLQVARGSN STLIAFIRGI GQQDPVWGFE PGVGLYVDDV YIARPQGAVL DIFDIDRVEV LRGPQGTLYG RNTIGGAIKY VTRRLGHDFE AKVRASYGSY NQREIVASVT VPLTDTFSIG GAVAYYKRDG FGKNLFTGAE HYNKDVLAGR VSAEWTPTDQ LSVRLAADET RDNSNPRHGY RLLPNGGLPD FNPIGDVYDT RAGVGDDNKV VTKGVSGTIE YEASDLLTLK SITAYRKGHT DTVIDFDGTP GPVLDIPSFY KDHQFTQEFQ ALLQSDRVQG VFGLYYLNGS ASGAFDTVIG NANLTTLTSG DVDTKSYAAF ADVSVKLSDQ FSVSVGGRYT SDKREGTVFR ADYLGLRSPL FGRPTAVPFR IRTDYTNSRT DKKFTPRLSL SYKPVEDVNL YASWSRGYKS GGFDPRGDAI FTPGTVDGYK PETVTAYEAG MKGAFLNRTL FVNVAGFYSD YKDQQVTTQF LSGTTVVSSV DNVGKSRIYG WELELRAVPD RDFQVQASVG YTNAKFKEFL TLDPLTLKVR DFADERVFQN TPKYTANVSA TLGHDFDGLG RVTITPALSF RSGYSLFEVP NPVLDQKAYE LVDLSIVWTS PDKRFSLSGH GRNLFDRKYR VGGYNFPGAL TGNSVIGFYG PPRTFTVTGE VRF
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