| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3848 |
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| Symbol | |
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| ID | 5197174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4229355 |
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| End bp | 4231997 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640583403 |
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| Product | RNAse E |
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| Protein accession | YP_001264331 |
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| Protein GI | 148556749 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACCC GCATGCTTAT CGACGCACGC CACCGGGAGG AAACCCGCGT GGCGGTCGTC
CAGGGGAACC GGATCGAGGA ATTTGACTTT GAGTCTGCCG AGCGCAAGCA GCTCAAGGGG
AATATCTATC TCGCCAAGGT AACGAGGGTC GAACCGTCGC TTCAGGCGGC GTTCGTCGAC
TATGGCGGCA ACCGCCACGG CTTCCTCGCC TTCTCGGAAA TCCACCCCGA TTATTATCAG
ATCCCCAAGG AGGACCGCGA GGCGCTGCTC CGCGAGGAGG CCGAGCATGC CGCCGAGGAA
GAGGCGCTGC GCGCCCGCGA GGCGGAGCAT GACGACGACG GCGAGGAGAT CGAGGACGAC
GGCCACGATC ACCATGACGA CCATGATCAT GACGAAGACG GCGAAGGTGG CGAGGAACGC
CCCCGCGCGC GCCGCGAATC GGTCGGCGGC GGTTCCGACG ATGGCGCCGT GGAGAATCTG
CGCCAGCGCC GGATGAACCT GCGCCGCCGC TACAAGATCC AGGACGTGAT CCGCCGGCGG
CAGGTGCTGC TGGTCCAGGT CGTCAAGGAG GAGCGCGGCA ACAAGGGCGC GGCGCTGACC
ACCTATTTGT CGCTGGCCGG CCGCTATTGC GTGCTGATGC CGAACACCAG CCATGGCGGC
GGCATCAGCC GCAAGATATC GAACGCGGCC GACCGCAAGC GGCTCAAGTC GATCATGGCC
GAGCTGAACC TGCCGAAGAC GATGGGCTGC ATCGTCCGCA CCGCCGGCCT CCAGCGCACC
AAGACCGAGA TCAAGCGCGA CTTCGACTAT CTCGCCCGGC TGTGGGACGA GATTCGCGAG
AACACGCTCG GTTCGCAGGC GCCGGCGCTG ATCTACGGCG ACAGCGACCT GATCAAGCGC
GCGATCCGCG ACATCTACAA CCGCGACATC GACGAGGTCG TGGTCGAGGG CGAGGAGGGC
TATCGACAGG CCCGCGCCTT CATGAAGCTG CTGATGCCGA GCCACGCCAA GAAGGTCGGG
CTCTATGCCG ACGCGGTGCC GCTGTTCCAG CGCTTCGGCG TCGAGGACCA GCTCGCGGCG
ATGTACCAGC CGATCGTCCA GCTCAAGTCG GGCGGCTATC TGGTGATCAA CCCGACCGAG
GCGCTGGTGT CGATCGACAT CAACTCGGGC CGGTCGACCC GCGAGCATAA TATCGAGCAG
ACCGCGACCG CGACCAACCT CGAGGCCGCG CACGAGATCG CCCGCCAGCT CCGCCTGCGC
GACATGGCGG GCCTGATCGT CATCGACTTC ATCGACATGG AGAACAACTC CAACATCCGT
AAGGTCGAGA AGGCGATGAA GGAGGCGCTC AAGAACGATC GCGCCCGCAT CCAGGTCGGC
CGCATCTCCA GCTTCGGCCT GTTCGAGATG AGCCGCCAGC GCCTGCGCAC CGGCGTGCTC
GAGGCCTCGA CCCGGCAGTG CCCGCATTGC GAGGGCACCG GTCTGATCCG CACCGCCTCC
TCGGCGGGCC TGTCGGCGCT GCGCATGCTC GAGGACGAGG CCGCGCGCGG CCGCGGCTCG
CGCCTGCTGC TGCGCGCCAG CCAGGAAGCC GCCTTCTACG TCCTCAACCG CAAGCGCGCC
GAGCTGGCCG AGATCGAGGA GCGCTACGGC GTCGTCATCG AGATCGTCTC CGACGGCACG
CTCGAAGGCG CGCGGATGAG CGTCGAGGCC GGCGGTCCGC CGCCGAGCCA TGCGCCGCGC
CTGCCCGCGC CGCTCCCGAT CGAGGCCGAT GACGACATCG AGGAGGAGAT CGAGGACGAA
GAGGAGGAGG AGATCGCCGC CGAGGACGAA GGCCAGGAGG ATGGCGAGCG TGGCGACGGC
AATCGTCGCC GTCGCCGTCG TCGCCGTCGT CGTGGCGGTC GCGGTCGCGA TCAGGATGGC
CAGGGCGAGG CCGGCCAGGC CGATGAGGCC GGCGAGACCG ACGAAGCCGA CGAGCCTTCC
GAGGAGGCCG AGGAGGCCGC CGCCGAGGAT GGCTCCGCCG AGCCGCGCGG CCGTCGCCGC
CGTGGCCGTC GCTCGGGCCG TCGCCGTAGC GGCGAAGGCG CCGAGACCGA GGGTGAGGCG
ATCGAACAGG CCGAGGCTCC GCTGAGCGAG CCGGTGGCCG AGGACGCGCC GGTCGCGGCC
GAGTCCGAAG CCGTCGCCGA GGAAGCGGCC CCCGCCGAGC CGGCACCGAA GACGCGCCGC
CGGCCGCGTG CCCGCAAGGC CGATGCCGCC CCCGTCGAGG CTGTCGAGAT GCCGGCCGAG
GAGGCAGCGC CCGTCGCCGC CGAGCCCGAG GCCGAACCGG TCGCCGAGGC GCCCAAGCCG
CGCCGTGGCG GTCGCCGCAA GAAGGCCGAG GTCGAGGCGG AAGCCGCTGC GGCCCCCGCC
GCCGTGGAAG CTGCGTCGGT CGAAGCCGCT CCGGCCGAGC CGGAAGCCGA GCCTGCCGCG
GAAGCCGCGC CCAAGCGCCG CACCCGTTCG CGGGCCAAGG CCGCCGCTGC CGCGCCGGCC
GAGACCGTCG AGGCCGTGGC TGAAGTCTCC GAGCCTGCCG GCGAAGCCGC CTCCGCCGAA
GAGGCGGAGG AGGACGGCGG TTCGCCGCGC CGCGGCTGGT GGCAGCGGAC CTTCGGCGCC
TGA
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| Protein sequence | MTTRMLIDAR HREETRVAVV QGNRIEEFDF ESAERKQLKG NIYLAKVTRV EPSLQAAFVD
YGGNRHGFLA FSEIHPDYYQ IPKEDREALL REEAEHAAEE EALRAREAEH DDDGEEIEDD
GHDHHDDHDH DEDGEGGEER PRARRESVGG GSDDGAVENL RQRRMNLRRR YKIQDVIRRR
QVLLVQVVKE ERGNKGAALT TYLSLAGRYC VLMPNTSHGG GISRKISNAA DRKRLKSIMA
ELNLPKTMGC IVRTAGLQRT KTEIKRDFDY LARLWDEIRE NTLGSQAPAL IYGDSDLIKR
AIRDIYNRDI DEVVVEGEEG YRQARAFMKL LMPSHAKKVG LYADAVPLFQ RFGVEDQLAA
MYQPIVQLKS GGYLVINPTE ALVSIDINSG RSTREHNIEQ TATATNLEAA HEIARQLRLR
DMAGLIVIDF IDMENNSNIR KVEKAMKEAL KNDRARIQVG RISSFGLFEM SRQRLRTGVL
EASTRQCPHC EGTGLIRTAS SAGLSALRML EDEAARGRGS RLLLRASQEA AFYVLNRKRA
ELAEIEERYG VVIEIVSDGT LEGARMSVEA GGPPPSHAPR LPAPLPIEAD DDIEEEIEDE
EEEEIAAEDE GQEDGERGDG NRRRRRRRRR RGGRGRDQDG QGEAGQADEA GETDEADEPS
EEAEEAAAED GSAEPRGRRR RGRRSGRRRS GEGAETEGEA IEQAEAPLSE PVAEDAPVAA
ESEAVAEEAA PAEPAPKTRR RPRARKADAA PVEAVEMPAE EAAPVAAEPE AEPVAEAPKP
RRGGRRKKAE VEAEAAAAPA AVEAASVEAA PAEPEAEPAA EAAPKRRTRS RAKAAAAAPA
ETVEAVAEVS EPAGEAASAE EAEEDGGSPR RGWWQRTFGA
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