| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3842 |
|---|
| Symbol | |
|---|
| ID | 5198342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4218376 |
|---|
| End bp | 4221522 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583397 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001264325 |
|---|
| Protein GI | 148556743 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.267176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.557666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATCGC GCATCTTCAT CGATCGCCCG ATCTTCGCCT GGGTGATCGC GATCGTGATC
ATGCTGCTCG GCGCGGGCGG GCTGCTCAGC CTGCCGGTGT CGCAATATCC GAACATCGCC
CCGCCGTCGG TCAATATCCG GGCCAATTAT CCCGGCGCAT CGGCCGAGAC GGTCGAATCG
AACATCACCC AGATCATCGA GCAGCAGCTC TCGGGCATCG ACGGGCTGCT CTATTTCTCG
TCCTCGTCCA GTTCGGCGGG CCGGGCCCAG ATCACCGTCA CCTTCGACAA GAGCGTCGAC
GCGGACATCG CCCAGGTCCA GGTGCAGAAC AAGGTGCAGC AGGCCCTGCC GCGCCTGCCG
CAGCAGGTCC AGCAGCAAGG GCTGGTCGTC ACCAAGTCGA ACCCCGACTT CCTGATGGTG
GTGTCGGTCT ATGACGAGAG CGACCGGGCG AGCAATCTCG ACGTCGCCGA CTATCTGACC
TCGACCCTCC AGGACGGCAT CGGCCGCCTG CCCGGCGTCG GCGACGTCAA CGTGTTCGGC
GCGCCCTATG CGATGCGCAT CTGGCTCGAC CCGTACCGGC TGGCCAGCTT CGGGCTGACC
CCCGACGACG TGACGTCCGC GCTGCAGGCG CAGAACGCGC AGGTCGCGGC GGGACAGATC
GGCGGCGTGC CGTCGCCCGA CTCGCAGATG CTCAACGCGA TCGTCACCTC GCGGTCGCGG
CTGACCAACG TCGACGAGTT CAAGAAGATC ATCGTCAAGA CGCAGACCGA CGGGTCCAAG
GTCATGCTGC AGGACGTCGC GCGGGTCGAG CTGGGCAGCG AATCCTACAA TGTCGTCGGC
CGCCTCAACG GCCATCCGGG GGCCGGCATC GCGATCCTCC TCGCCCCCGG CGCGGACGCG
CTCAAGACGT CCGAGATCGT CCGGAGCTAT GTCGACAAGG CGGCCGAGCG CTTCCCGCAC
GGCTATCGCC ACGTCTTCGT CAATGACGCG ACCGCCTTCA TCAAGCTGTC GATCGAGGAG
GTGGTCAAGA CGCTGTTCGA GGCGATCCTG CTGGTCGTCC TCGTCATGTT CGTCTTCCTG
CAGAGCTGGC GGGCGACGCT GATTCCCGCG GTGGCGGTCC CGGTCGTGCT GCTCGGCACC
TTCGGCGTGC TGGCGGCGGC GGGCTTCTCG ATCAACACGC TGACATTGTT CAGCCTCGTC
CTCGCCATCG GCCTGCTCGT CGACGACGCC ATCGTCGTGG TCGAGAATGT CGAGCGCGTG
ATGGAGGAAG ACCCCGACAT CAGCCCGCGC GAAGCGACGA TCAAGTCGAT GGCGGAGATC
AACACCGCGC TGATCGCGAT CGCGCTGGTG CTGTCGGCGG TGTTCCTGCC GATGGCCTTC
TTCGGCGGTT CGACCGGCGT GATCTACCGC CAGTTCTCGA TCACCATCGT CGCGTCGATG
GCGCTGTCGG TGTTCGTCGC GCTGGTCCTG TCGCCGGCGC TGGCGGCGAC GGTGCTCAAG
CGCCCCGACA AGGAGAAGCG CGCCGCGCAA GGCGGCATCG TCGGGCGCGC CTATCATCAG
GGCGATCGCT TCAACGAATG GTTCAAGCGC ATGTCGGACC GCTATCGCGA CACCGTCTCG
AAGCTGTTCG GCCATATGCG GACCGCGATG ATCGTCTTCG TGCTGGTGAT CGCGGCGCTG
GTGCTGGTCT TCTTCCGCCT GCCCACCGGC TTCGTGCCGA CCGAGGACCA GGGGATCGCC
CAGACCCAAT ATACGCTGGC GCCCGGCGCG ACGATGAGCC GGACCGTCGC GGTCGCGCGC
GAGATCGAGG CCTATCTGGC CAAGAACGAG CCGCACAACA TCCTGACCTT CTACACCGTC
AGCGGCACCA GCGCCGCCGG CCAGGGCCAG AATGCCGGCC GCGGCTTCAT CGCGCTCGCC
CCCTGGGACG AGCGCAAGGG GCCCGAGAAC AGTTCGGAGG CCATCGCCCG CCGCGCCACC
CAGGCGCTGT CCAAGGTCCG CGACGCGCAG ATCTTCATCC TGACGCCGCC GTCGATCCCC
GGCCTGGGGC AGTCGACCGG CTTCTCGATG GAGCTGCTCA ACACCGGCGA TCTCAGCCGC
GAGGAGTTCA AGCAGCGCCG CGACCAGTTG CTCGCGCTGG CGTCCGCCGA CCCCGAGCTT
GCCAATGTCC GCCTCAACAC GCTCGAAGAC ACGCCGACGC TCGCCGTCGA CATCGATTCG
GAGAAGGTCG GCGCCCTCGG CGTCAGCCAG TCCGCGGTCA ACCAGACGCT CGCGGCGGCG
TGGGGCGGAT TATACGTCAA CGATTTCGTC GACCGCGGCC GCGTCAAGCG CGTCTTCGTC
CAGGGCGACG CTCCGTTCCG CAGCCGGCCG GAGGACCTTG CGGCCTGGCA CGTCCGCTCC
GCATCGGGGC AGATGGTGCC CTTCTCGGCC TTCTCCACGA TCCATTGGGC GCAGACCCCG
AATCTGCTGA CCCGCTTCAA CGGCGTGTCG AACTTCACCT TCCAGGGACA GGGCGCGCCG
GGCAAGAGCT CGGGCGACGC GATGAAGCGG ATCACCGAAC TGGCGGCGCA GGTTCCGGGG
GTCTCGGTCG ACTGGTCGGG GCTCAGCTAT CAGGAACGGC TGTCGGGCGG GCAGGCACCG
ATCCTCTATG GCCTGTCGGT GCTCGTCGTC TTCCTGTGCC TGGCCGCGCT CTACGAAAGC
TGGTCGATCC CGATCGCGGT CGTCATGGTC ATCCCGCTCG GCCTGATCGG CGCGACGCTG
GCGGTGCTGG CGCGCGGGCT GGAGAATGAC GTCTTCTTCC AGGTCGGCCT CGTCACCACC
ATGGGGTTGA GCGCCAAGAA CGCGATCCTG ATCGTCGAAT TCGCGGTGAT GGCGGAGAAT
GACGGCAAGA CGCCGTTGCA GGCGGCGATC GAGGGCGCGC GCATCCGCCT GCGCCCGATC
CTGATGACCA GCTTCGCCTT CATGTTCGGC GTGCTGCCGC TCGCCATCTC GACCGGCGCG
GGCGCCAAGG CGCGCGTGGC GATCGGCACC GCCGTGCTGG GCGGCATGTT CACCGCCACC
CTGCTCGCGC TGTTCTTCGT GCCGCTGTTC TTCGTGCTGG TCCGCAAGCT CTTCCCGCGC
AAGCGCAACG GGGATGTCGC CGCATGA
|
|---|
| Protein sequence | MISRIFIDRP IFAWVIAIVI MLLGAGGLLS LPVSQYPNIA PPSVNIRANY PGASAETVES
NITQIIEQQL SGIDGLLYFS SSSSSAGRAQ ITVTFDKSVD ADIAQVQVQN KVQQALPRLP
QQVQQQGLVV TKSNPDFLMV VSVYDESDRA SNLDVADYLT STLQDGIGRL PGVGDVNVFG
APYAMRIWLD PYRLASFGLT PDDVTSALQA QNAQVAAGQI GGVPSPDSQM LNAIVTSRSR
LTNVDEFKKI IVKTQTDGSK VMLQDVARVE LGSESYNVVG RLNGHPGAGI AILLAPGADA
LKTSEIVRSY VDKAAERFPH GYRHVFVNDA TAFIKLSIEE VVKTLFEAIL LVVLVMFVFL
QSWRATLIPA VAVPVVLLGT FGVLAAAGFS INTLTLFSLV LAIGLLVDDA IVVVENVERV
MEEDPDISPR EATIKSMAEI NTALIAIALV LSAVFLPMAF FGGSTGVIYR QFSITIVASM
ALSVFVALVL SPALAATVLK RPDKEKRAAQ GGIVGRAYHQ GDRFNEWFKR MSDRYRDTVS
KLFGHMRTAM IVFVLVIAAL VLVFFRLPTG FVPTEDQGIA QTQYTLAPGA TMSRTVAVAR
EIEAYLAKNE PHNILTFYTV SGTSAAGQGQ NAGRGFIALA PWDERKGPEN SSEAIARRAT
QALSKVRDAQ IFILTPPSIP GLGQSTGFSM ELLNTGDLSR EEFKQRRDQL LALASADPEL
ANVRLNTLED TPTLAVDIDS EKVGALGVSQ SAVNQTLAAA WGGLYVNDFV DRGRVKRVFV
QGDAPFRSRP EDLAAWHVRS ASGQMVPFSA FSTIHWAQTP NLLTRFNGVS NFTFQGQGAP
GKSSGDAMKR ITELAAQVPG VSVDWSGLSY QERLSGGQAP ILYGLSVLVV FLCLAALYES
WSIPIAVVMV IPLGLIGATL AVLARGLEND VFFQVGLVTT MGLSAKNAIL IVEFAVMAEN
DGKTPLQAAI EGARIRLRPI LMTSFAFMFG VLPLAISTGA GAKARVAIGT AVLGGMFTAT
LLALFFVPLF FVLVRKLFPR KRNGDVAA
|
|---|
| |