| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3841 |
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| Symbol | |
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| ID | 5198341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4216907 |
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| End bp | 4218379 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640583396 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001264324 |
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| Protein GI | 148556742 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.626052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.467321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCC GCGCCGCCGC GCTGCTGACG ATGACCGCGC TCGCGGCGTG CAGCTTCGAG
CCGGCCTATC ACCGGCCGGC GCCCGCCGTC CCCGCCGCCC TGCCCGACGC CGGCCAGGGC
GAGGCGCCCG CCAGGCTCGA CTATCGCGAG ATATTCCGCG ACCCCCGGCT GGTCACGCTG
ATCGACCGGG CGCTCGCCAA CAACCAGGAC CTCAAGGCCG CGCTGGCCAA TGTCCGGTCC
GCCCGCGCGC TGGTGACGGT CGCGCGCGCC GACCTCCTGC CCCAGCTCGA CGGATCGGCC
GGCCTCACCA TCGGCGACAG CTCGAACGAG ACGCGCGGCG GCACGGGCAG CGGCGCGACG
GGCGGAAGCG GCAACGGCGC GAGCACCGGC GGCCGGCGCA CCACCTACAA TGCCGATCTG
GGGGTAAGCT GGGAGATCGA CCTGTTCGGC CGGCTCCGCA GCCTGAACAA CGCCGCGTTC
GACACCTATC TCGGCAGCGA GGCGGCCCAG CGTGGCGCCC GCCTCAGCCT CGTCGCCGGG
GTCGCCAACG CCTATCTGGC GCTCGCCGCC GACCGCAGCC TGCTCGCCAT CGCCACCGAG
ACCCGGACCA GCGCGGCCAG GAGCGTCGAG CTGACCCAGG CGCTGCTCAA GGGCGGCGTC
GCCCCGCGCA CCGACCTGCG GCAGGCCGAA ACCGTGCTGG CCCAGGCCGA GGCCGACGAG
GCCAGCCTGG AGACCGCCGT CGCGCAGGAC CGCAACGCGC TTCAGCTCCT CGTCGGCGCG
GCGATCGAGG ACGATCTGCT GCCGGCCTCG ATCGAGAGCC TCGACGGCCA GCTCGCCGAG
GTGCCGGCCG GACTCGACTC GTCGATCCTG CTGCGCCGGC CGGACGTGGT CGAAAGCGAA
TATGCGCTGC GGGCGGCCAA TGCCCGGATC GGCGCGGCGC GGGCCGCCTT CTTCCCGCGC
ATCGGCCTGA CCGCGCTCGC CGGCTTCGCC AGCAGCGCGC TGTCGAGCCT CTTCCAGGGC
AGCGCCTTCA CCTGGAGCGT CGCCCCCTCG GCGACGCTGC CGATCTTCGA CGGCGGCGCC
AATCTCGGCA ATCTGCGCTA CTCGAAGGCG CAGCGCGACC TGGCGCTCGC CAATTACCAG
AAGGCGATCC AGTCGGCCTT CCGCGACGTC GCCGACGCGC TGGCGCGGCG CGCGACGATC
GACCGGCAGC TCGCCGCCAG CACCAAGCTC GACGCGTCGG CCCGCGATTC GCTGTTCCTC
GCCAATGCCC GCTACCGCGA GGGCATCGAT CCCTATCTGA ACATGCTCGA TGCGCAGCGC
ACCGCCTATG GCGCCGCGCG CACGCTGGCC CAGGCGCGGC TGCTCAAGGC GCAGAATCTG
GTGACGCTCT ACCAGGCGCT GGGCGGGGAC CAGTTGATCG ACACATCTGG CGATTCATTC
AGCCTGTTGT CAGTTTCGCA CCCTAAACGA TGA
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| Protein sequence | MIRRAAALLT MTALAACSFE PAYHRPAPAV PAALPDAGQG EAPARLDYRE IFRDPRLVTL
IDRALANNQD LKAALANVRS ARALVTVARA DLLPQLDGSA GLTIGDSSNE TRGGTGSGAT
GGSGNGASTG GRRTTYNADL GVSWEIDLFG RLRSLNNAAF DTYLGSEAAQ RGARLSLVAG
VANAYLALAA DRSLLAIATE TRTSAARSVE LTQALLKGGV APRTDLRQAE TVLAQAEADE
ASLETAVAQD RNALQLLVGA AIEDDLLPAS IESLDGQLAE VPAGLDSSIL LRRPDVVESE
YALRAANARI GAARAAFFPR IGLTALAGFA SSALSSLFQG SAFTWSVAPS ATLPIFDGGA
NLGNLRYSKA QRDLALANYQ KAIQSAFRDV ADALARRATI DRQLAASTKL DASARDSLFL
ANARYREGID PYLNMLDAQR TAYGAARTLA QARLLKAQNL VTLYQALGGD QLIDTSGDSF
SLLSVSHPKR
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