Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3758 |
Symbol | |
ID | 5196276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4120633 |
End bp | 4122936 |
Gene Length | 2304 bp |
Protein Length | 767 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583313 |
Product | TonB-dependent receptor |
Protein accession | YP_001264241 |
Protein GI | 148556659 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.626762 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAAGT CCAACCGGGT CAGGATCATG CTTCTCGGCG GCGCGGCGCT ATGGCTGGGC GCCAGCATGG CCCAGGCCCA GGTCGCCGCG GATTCGGCCG ACGATGCGGC CGGCGGCCTG CAGGAGATCG TGGTCACCGC GCAGAAGCGC GCCCAGAACA TCCAGCGGGT GGGCATCGCC ATCACCGCGG TGACGCCCGA GCAGATCGCC AACCGCAACA TCGCCAGCAG CGCCGATCTC GCCGGCAAGG TGGTCGGGCT GGAAAGCTAT TCGCCCTATG GCCCCGGCAC CTCGTCCAAC GTCGTGATCC GCGGCATCGG CCTCAACGAC TTCGGCGAAG GCCATGAGGC GCCGGTCACC TCCTATGTCG ACGAATTCTA CATCGTCGCG GTCCCGGCGG TCGACTTCGC ACTGTTCGAC CTCGACCGGG TCGAGGTGCT GCGCGGCCCG CAGGGGACGC TGTTCGGGCG CAACTCGACC GGCGGCCTGA TCAACTACAT CACCAAGCGC CCGAGCCAGA CCGCCGAGGG CTATCTCTCG GCCAGCTACG GCCGCTTCAA CGACCTCAAG CTCGAAGGCG CCGCGACCGC GCCGCTGAGC GACACGCTGT CGATGCGCCT GTCGGGCACG TCGCGCCACA GCGACGGTTT CCAGAGGAAC ATCAACCCCG CGCTGGAGCG CGGCGGCCAG GCCGGATCGG ACGCCGCCCG CCTCCAGCTC CGCTACCAGG GCGACGACGG CTGGGACATC CTGCTCAAGG GCGAATATGG CCGCACCAAG ACGACCCATG CCTATTATGA GAGCAAGACG GGCTTCGTCG ACGCCAACGG CCTGGTGGTC GCCGACCCGA CGATCGTCGA CGCGGTCGGC TATGCCGAGC GCAACACCCC GGCGGCGAAG AAGAACGTCG TCAACACCAA CGACGCGGCC TTCCTCCGTT CGTCCGGCTA TTCGGGCCTG CTGCGGATCG AGAAGAAGTT CGGTGACACG ACCTTCACCA GCCTGACCGG CTACCAGTCG TACAAGCGGC GGATGCAGGA GGACAGCGAC GGCACCCCGA ACCCGCTGGT CTTCGCGAGC TTCCCCTATC AGGGCAAGCA GCTGACCCAG GAACTGCGCC TCTATCATGA CGGGCAGTCG ACCCGCTGGA CGGTCGGCCT CTACGGCATG CGCGCGCTGG GCAAGGACCA GCCGACGGCG GTGTTCAACT TCCCGCTCGA CGGGCCGACC GCGGTCGATC CGGCGACGGG GCTCTACAAC GGCACCTATT TCCCGATCAG CCTCAACGCC GACTGGCGGC TGCGGACCAA TTCGGGCGCG GTGTTCGGCC AGATCGAGCA GGACTTCGGC AAGTTCACCG CGATCGGCGG CATCCGCGTA ACCCGCGACC GCAAGACCTT CGCCGATCGC GACAATGCGG CGCTGCGCGA TTGCGGCGGC GGCGCGGTGG GCGACTGCTT CCTGGTCGGT GACGGCGGCA CCGGCACCCC GGTCCCGTTC CGGCTGAAGT ACAGGGCCAC CCTGTGGTCG GGGAAGATCG AGCTCGACTA CAAGCCCGAC AGCAACAACC TGCTCTATGC CAGCATCTCG CGCGGGACCA AGGCCGGCGG CTTCAACAAC GGCTTCTATC CCACCGGAGT CTCGCTCGCG CGGATTCCCT ATGGCGATGA AACGCTGATC TCCTACGAGG TCGGGCAGAA GTCGACGCTG TTCGATCGCA AGCTGCGCAT CAACACCTCG GCCTTCTATT ACGACTATAA GGACTATCAG GCGTTCAACT ATGTCGGGCT GGCCGGCCTG ATCACCAACC AGGACGCGAC CGCCTACGGC ATCGAGACCG ATATCGAGGC GGCGGTGACG CCGGAGCTTC GCCTCTATGC GGCAGGCGCC TATCTGCACA CCGACATCGA GGACGTGGCG AAGGTCACCC CGGTGGGCAC CACGGTCGTA GCCGATCGCC CGATGGCCTT CGCGCCGAAG TGGAGCGCGA GCGGCGGCGC GACCTACACG ATCGCGCTGC CGAACGACCA GAGCCTCGCG CTCGACTGGA ACTTCGAGGC GCGGTCGGCC CGCTATTCGG GCAATTTCGG CGATCCGGGC ACGCAGCTCG AAGGCTATTT CAAGCATAAT GCCTCGATCA CCTACGAGGC GGCCGAGCAT TGGCAGCTGC GGGCGTTCGT CGACAATATC AGCAACCGGC TCAACACCAC CTATGGCGGC CCGTCCTTCG CGTCGCTCGG CATCATCCAG GTGCGCTACG CGATGCCGCG CACCTATGGT GCGGCCGTGC GCTATCGCTG GTAG
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Protein sequence | MSKSNRVRIM LLGGAALWLG ASMAQAQVAA DSADDAAGGL QEIVVTAQKR AQNIQRVGIA ITAVTPEQIA NRNIASSADL AGKVVGLESY SPYGPGTSSN VVIRGIGLND FGEGHEAPVT SYVDEFYIVA VPAVDFALFD LDRVEVLRGP QGTLFGRNST GGLINYITKR PSQTAEGYLS ASYGRFNDLK LEGAATAPLS DTLSMRLSGT SRHSDGFQRN INPALERGGQ AGSDAARLQL RYQGDDGWDI LLKGEYGRTK TTHAYYESKT GFVDANGLVV ADPTIVDAVG YAERNTPAAK KNVVNTNDAA FLRSSGYSGL LRIEKKFGDT TFTSLTGYQS YKRRMQEDSD GTPNPLVFAS FPYQGKQLTQ ELRLYHDGQS TRWTVGLYGM RALGKDQPTA VFNFPLDGPT AVDPATGLYN GTYFPISLNA DWRLRTNSGA VFGQIEQDFG KFTAIGGIRV TRDRKTFADR DNAALRDCGG GAVGDCFLVG DGGTGTPVPF RLKYRATLWS GKIELDYKPD SNNLLYASIS RGTKAGGFNN GFYPTGVSLA RIPYGDETLI SYEVGQKSTL FDRKLRINTS AFYYDYKDYQ AFNYVGLAGL ITNQDATAYG IETDIEAAVT PELRLYAAGA YLHTDIEDVA KVTPVGTTVV ADRPMAFAPK WSASGGATYT IALPNDQSLA LDWNFEARSA RYSGNFGDPG TQLEGYFKHN ASITYEAAEH WQLRAFVDNI SNRLNTTYGG PSFASLGIIQ VRYAMPRTYG AAVRYRW
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