Gene Swit_3709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3709 
Symbol 
ID5196308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4071886 
End bp4073343 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content66% 
IMG OID640583265 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001264193 
Protein GI148556611 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATTTC CCCCTCATCG ACAGTTGCGT CTTGCGGTGG TGCTATTCAG CTGCATTTCG 
TTGACCGCCT GTGTCGTCGG CCCCGACTAT CACGCGCCGC CTTCCGTGGA CACGGGCAGC
GGCTGGACCC AGGCAGCGGC GGGGGCGTCC GCCCCTGCCG ACCTTGTCCG CTGGTGGTCA
ACGCTGGGCG ACCCTGAACT GGAGAGACTG GTCGACACTG CACTGGCGCA AAATCTCGAT
ATCCGTCAGG CAGCGGCGCG GATCGATGAA GCGCGCGCTC TGCGCGATCG GGCCGCTGGT
CAGCAACTGC CCGCTGTTTC CGCAGGCGCC AGCGTGAACC GCCGCCGACA AAGCGAGAAT
GGCCCACTGC CGGTTGGTTC CATTCCCGGA CTAGATGCGT CGCAGACAAT CTATGATGCC
GGCTTCGATG CTGCGTGGGA AGTCGACCTG TTTGGCGCCA ATCGCCGGGC GCTGGAAGGC
GCCAGCGCGC GGTTGCAGGC GACCCAAGCC GAAGCGCAGG GTGTACGTAT GCGGATCGCG
GCGGAGGTCG CTCGCACATG GTTCGAGGCG ACTGGCGCCG GGGAAGAATT GCTTACGCAG
CAGGCGACGG TCGCAACGTT GCAACAGACG CTGGACCTCA TGCGCAGCCG TGCCGCTCTC
GGCGATGTTT CCCGCGCCGA TGTGGACGCA GCCTATGAGC GGTGGGCTGC CGCCAATGCC
ATGCTACCGG GCATTGCGGC GCGTCAGCGC GGAGCCGTGC TCGGTCTTGG CGTCCTGCTC
GGCGCACCCC CGGAACGGGA ACTGAAGCTG CTCGATACCG CCGCGCCGGC GCGCGTCCTG
CCGGCACTGC CCGTAGGGGA ACGCGCCGAC ATATTGCGTC GCCGCCCCGA TGTTCTGGCT
GCTGAACGGC GGCTTGCTGC CAGCACCGCT GATATCGGCG TCGCCACCGC GGAGCTTTTC
CCCAAGCTGT CCATTGGTGC CGGCGGCGGC TTCCAGGCGC TCAGTCCGGG CGACTGGTTC
GATTCGTCCA GCACCCGCTA CTCCATCCTG CCGCTCATCT CTTGGCGATT GTTCGACGGC
GGCCGTGTGC GCGCGGAGAT ACGTGTCCGG GAGGCTGCCC AGCGGCAGGC CGCGCTGGGT
TATGAGCAGG CCGTGCTGGC GGCACTGGGA GATGCCGAGC GCACCTTGGG CGATTATAAT
GCAAGCTTGG ATACATTGAC ACGTCATCAA GCGGCGCTGG ATGCCTCGCG CCGCAGCTTT
GATCATGCTG AAGCGCGCTT TGCCGCAGGC GATATCACGC GAATTGAGCT GCTTGCGGCC
CAGCGCCTCC TTCATGAGGC CGAAACCGCA AATCTGCGCG CGCGGACGAC AGCCGCTGTG
CAGATGGTCG CATTATACAA GGCGATCGGA GGGGGTTGGA ACCTGGCCGA TACAGCTTTC
GCTGCTCCCG GTTCGTGA
 
Protein sequence
MIFPPHRQLR LAVVLFSCIS LTACVVGPDY HAPPSVDTGS GWTQAAAGAS APADLVRWWS 
TLGDPELERL VDTALAQNLD IRQAAARIDE ARALRDRAAG QQLPAVSAGA SVNRRRQSEN
GPLPVGSIPG LDASQTIYDA GFDAAWEVDL FGANRRALEG ASARLQATQA EAQGVRMRIA
AEVARTWFEA TGAGEELLTQ QATVATLQQT LDLMRSRAAL GDVSRADVDA AYERWAAANA
MLPGIAARQR GAVLGLGVLL GAPPERELKL LDTAAPARVL PALPVGERAD ILRRRPDVLA
AERRLAASTA DIGVATAELF PKLSIGAGGG FQALSPGDWF DSSSTRYSIL PLISWRLFDG
GRVRAEIRVR EAAQRQAALG YEQAVLAALG DAERTLGDYN ASLDTLTRHQ AALDASRRSF
DHAEARFAAG DITRIELLAA QRLLHEAETA NLRARTTAAV QMVALYKAIG GGWNLADTAF
AAPGS