Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3709 |
Symbol | |
ID | 5196308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4071886 |
End bp | 4073343 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583265 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001264193 |
Protein GI | 148556611 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATTTC CCCCTCATCG ACAGTTGCGT CTTGCGGTGG TGCTATTCAG CTGCATTTCG TTGACCGCCT GTGTCGTCGG CCCCGACTAT CACGCGCCGC CTTCCGTGGA CACGGGCAGC GGCTGGACCC AGGCAGCGGC GGGGGCGTCC GCCCCTGCCG ACCTTGTCCG CTGGTGGTCA ACGCTGGGCG ACCCTGAACT GGAGAGACTG GTCGACACTG CACTGGCGCA AAATCTCGAT ATCCGTCAGG CAGCGGCGCG GATCGATGAA GCGCGCGCTC TGCGCGATCG GGCCGCTGGT CAGCAACTGC CCGCTGTTTC CGCAGGCGCC AGCGTGAACC GCCGCCGACA AAGCGAGAAT GGCCCACTGC CGGTTGGTTC CATTCCCGGA CTAGATGCGT CGCAGACAAT CTATGATGCC GGCTTCGATG CTGCGTGGGA AGTCGACCTG TTTGGCGCCA ATCGCCGGGC GCTGGAAGGC GCCAGCGCGC GGTTGCAGGC GACCCAAGCC GAAGCGCAGG GTGTACGTAT GCGGATCGCG GCGGAGGTCG CTCGCACATG GTTCGAGGCG ACTGGCGCCG GGGAAGAATT GCTTACGCAG CAGGCGACGG TCGCAACGTT GCAACAGACG CTGGACCTCA TGCGCAGCCG TGCCGCTCTC GGCGATGTTT CCCGCGCCGA TGTGGACGCA GCCTATGAGC GGTGGGCTGC CGCCAATGCC ATGCTACCGG GCATTGCGGC GCGTCAGCGC GGAGCCGTGC TCGGTCTTGG CGTCCTGCTC GGCGCACCCC CGGAACGGGA ACTGAAGCTG CTCGATACCG CCGCGCCGGC GCGCGTCCTG CCGGCACTGC CCGTAGGGGA ACGCGCCGAC ATATTGCGTC GCCGCCCCGA TGTTCTGGCT GCTGAACGGC GGCTTGCTGC CAGCACCGCT GATATCGGCG TCGCCACCGC GGAGCTTTTC CCCAAGCTGT CCATTGGTGC CGGCGGCGGC TTCCAGGCGC TCAGTCCGGG CGACTGGTTC GATTCGTCCA GCACCCGCTA CTCCATCCTG CCGCTCATCT CTTGGCGATT GTTCGACGGC GGCCGTGTGC GCGCGGAGAT ACGTGTCCGG GAGGCTGCCC AGCGGCAGGC CGCGCTGGGT TATGAGCAGG CCGTGCTGGC GGCACTGGGA GATGCCGAGC GCACCTTGGG CGATTATAAT GCAAGCTTGG ATACATTGAC ACGTCATCAA GCGGCGCTGG ATGCCTCGCG CCGCAGCTTT GATCATGCTG AAGCGCGCTT TGCCGCAGGC GATATCACGC GAATTGAGCT GCTTGCGGCC CAGCGCCTCC TTCATGAGGC CGAAACCGCA AATCTGCGCG CGCGGACGAC AGCCGCTGTG CAGATGGTCG CATTATACAA GGCGATCGGA GGGGGTTGGA ACCTGGCCGA TACAGCTTTC GCTGCTCCCG GTTCGTGA
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Protein sequence | MIFPPHRQLR LAVVLFSCIS LTACVVGPDY HAPPSVDTGS GWTQAAAGAS APADLVRWWS TLGDPELERL VDTALAQNLD IRQAAARIDE ARALRDRAAG QQLPAVSAGA SVNRRRQSEN GPLPVGSIPG LDASQTIYDA GFDAAWEVDL FGANRRALEG ASARLQATQA EAQGVRMRIA AEVARTWFEA TGAGEELLTQ QATVATLQQT LDLMRSRAAL GDVSRADVDA AYERWAAANA MLPGIAARQR GAVLGLGVLL GAPPERELKL LDTAAPARVL PALPVGERAD ILRRRPDVLA AERRLAASTA DIGVATAELF PKLSIGAGGG FQALSPGDWF DSSSTRYSIL PLISWRLFDG GRVRAEIRVR EAAQRQAALG YEQAVLAALG DAERTLGDYN ASLDTLTRHQ AALDASRRSF DHAEARFAAG DITRIELLAA QRLLHEAETA NLRARTTAAV QMVALYKAIG GGWNLADTAF AAPGS
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