| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3694 |
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| Symbol | |
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| ID | 5200336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4056572 |
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| End bp | 4059034 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640583250 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001264178 |
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| Protein GI | 148556596 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGCC TGCGCGAATA CAGGAATCGC GCCGCCCACC TGGCCGACTT CCTGCCCTGG
GCCGCGCTGG TCGGCGAGGG CGTCGTTCTC AACAAGGACG GCAGCTTTCA GCGCACGGCG
CGTTTTCGCG GCCCCGATCT CGACAGCGCC ACGCCTGCCG AGCTGGTCGC CACCACGGCG
CGGCTCAACA ACGCGCTGCG GCGGCTCGGT TCGGGCTGGG CGATCTTCGT TGAGGCACAG
CGCACGCCCG CGCTCGACTA CCCGGAATCC ACGTTCCCCG ATCCGGTCTC GGCGCTCGTG
GACATGGAGC GGCGCGAACA GTTCCGCGAG GAAGGCGCGC ATTTCGAGAG CGCCTATTAT
CTCACCTTGC TGTGGATGCC GCCGGCCGAA GAAGCCGCGC GCGCCGAAGG TTGGCTCTAC
GAGGGCCGAT CCACCTCCGG CGTCGATCCG TGGGAGCTGC TCAAGGGCTT CGCCGACCGC
AGCGACCGCG TTCTCAATCT GGTCGAAGGC TTCGTGCCCG AGGTCCGCTG GCTCGATGAC
GGCGAGACGC TGACCTATCT GCACAGCACG ATCTCGACCC GGCGCCAGCG TGTGCGCGTC
CCCGAGACGC CGATGCACCT GGACGCGCTG CTCGCCGACG AGCCGCTGAC CGGCGGGCTC
GAACCGCGCC TGGGCGACCA TCATCTCCGC ACGCTGACGA TCACGGGATT CCCCAGCGTC
ACCTTCCCCG GCCTGCTCGA CGAGCTGAAC CGGCTCGCCT TCGAGTATCG CTGGTCCACC
CGCGCGCTGA TGCTCGACAA GACCGACGCG ACCAGGCTGC TGACCAGGAT CAGGCGGCAA
TGGTTCGCCA AGCGCAAATC GGTCGCGGCC ATCCTCAAGG AAGTCATGAC CAACGAGGCG
TCCACGCTGC TCGACAGCGA CGCCTCGAAC AAGGCCGCCG ACGCCGACAC GGCTCTGCAA
GAGCTGGGCG CCGACTATGC CGGCATGGCC TACGTCACCG CGACGGTGAC GGTGTGGGAC
CGCGATCCCG CCATTGCGGC CGAGAAGCTG CGGCTGGTCG AGAAGGTTAT CCAGGGCCGC
GACTTCACCG TCATCCCCGA GGGGATGAAC GCGATCGAGG CATGGCTGGG GAGTCTGCCC
GGCCACACCT ACGCCAACGT CCGGCAACCG CCGATCTCCA CCATCAATCT CGCCCACCTG
ATCCCCCTGT CAGCAGTATG GGCGGGGCCG GAACGGGACG AGCACTTCGG ACAACCCCCC
TTGCTCTACG GCAGGACCGA AGGCTCGACC CCGTTCCGGT TTTCCCTTCA CCCCGATGGC
AGCGATGTCG GCCACACGCT GATCGTCGGC CCGACCGGCG CGGGCAAGTC GGTGCTGCTC
GCGCTCATGG CGATGCAGTT CCGCCGCTAC GAGAACGCCC AGGTCTTCGC GTTCGACTTC
GGTGGCTCGA TCCGCGCCGC CACGCTGGCG GCGGGCGGAG ACTGGCAGGA TCTCGGCGGC
GGGCTATCCG ACGACGGCGA CGGCGACGGC GGCGTCCAGC TACAGCCGCT CGCCCGTATC
GACGATCCGG CCGAGCGCGC ATGGGCGGCC GAATGGCTGG CGGCGATCCT CGCCAGCGAA
GGCGTTACGG TCGATCCCCA GGCCAAGGAG CATATCTGGT CGGCGCTGGG CTCGCTCGCC
AGCGCACCGC AGGCCGAACG CACGCTGACC GGGCTCGCGG TCCTCTTGCA GAGCCAGCAG
CTCAAGCAGG CGCTCGCGCC CTATTGCATC GGCGGGCCGT GGGGCCGGCT GCTTGACGCC
GAGGCCGAGC GGCTGGGCGA AGCCGACATG CAAGCCTTCG AGACCGAAGG ACTGGTCGGC
GCCGGCTCGG CCGCCGCGGT GCTCTCCTAT CTGTTCCATC GGATCGAAGG GCGGCTGGAC
GGGTCGCCGA CGCTCATCAT CATCGACGAG GGCTGGCTGG TCCTCGACAG CCCGGACTTC
GCCGCGCAGC TTCGCGAGTG GCTGAAGACG CTGCGCAAGC GCAATGCCAG CGTCGTCTTC
GCGACGCAGA GCCTCGCCGA CATCGAGACG TCGAGCATCG CGCCGGCCAT CATCGAGTCC
TGCCCGACAC GCATCTTCCT GCCGAACGAG CGCGCGGCCG AGCCGCAGAT CGCGGCCATC
TACGAACGCT TCGGGCTCAA CGCCCGGCAG ATCGAAATCC TCAGCCGGGC GACGCCGAAG
CGCGACTACT ACTGCCAGTC GCGGCGCGGC AACCGCCTGT TCGAGCTGGG GCTGGGCGAG
GTCGCACTGA CCTTCGCCGC CGCGTCGTCG AAGACCGGCC AGCTCGCCAT CGCCGACATC
ATCGAGACCC ACGGCCAGGC CGGCTTCGCG GCCGAATGGC TGCGCCATCG CGGCTGCGCC
TGGGCTGTCG AGCTTCTTCC CCCCGATCCG CAACGCCAAC CCCAGCAGGA GCTACCTCTA
TGA
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| Protein sequence | MMSLREYRNR AAHLADFLPW AALVGEGVVL NKDGSFQRTA RFRGPDLDSA TPAELVATTA
RLNNALRRLG SGWAIFVEAQ RTPALDYPES TFPDPVSALV DMERREQFRE EGAHFESAYY
LTLLWMPPAE EAARAEGWLY EGRSTSGVDP WELLKGFADR SDRVLNLVEG FVPEVRWLDD
GETLTYLHST ISTRRQRVRV PETPMHLDAL LADEPLTGGL EPRLGDHHLR TLTITGFPSV
TFPGLLDELN RLAFEYRWST RALMLDKTDA TRLLTRIRRQ WFAKRKSVAA ILKEVMTNEA
STLLDSDASN KAADADTALQ ELGADYAGMA YVTATVTVWD RDPAIAAEKL RLVEKVIQGR
DFTVIPEGMN AIEAWLGSLP GHTYANVRQP PISTINLAHL IPLSAVWAGP ERDEHFGQPP
LLYGRTEGST PFRFSLHPDG SDVGHTLIVG PTGAGKSVLL ALMAMQFRRY ENAQVFAFDF
GGSIRAATLA AGGDWQDLGG GLSDDGDGDG GVQLQPLARI DDPAERAWAA EWLAAILASE
GVTVDPQAKE HIWSALGSLA SAPQAERTLT GLAVLLQSQQ LKQALAPYCI GGPWGRLLDA
EAERLGEADM QAFETEGLVG AGSAAAVLSY LFHRIEGRLD GSPTLIIIDE GWLVLDSPDF
AAQLREWLKT LRKRNASVVF ATQSLADIET SSIAPAIIES CPTRIFLPNE RAAEPQIAAI
YERFGLNARQ IEILSRATPK RDYYCQSRRG NRLFELGLGE VALTFAAASS KTGQLAIADI
IETHGQAGFA AEWLRHRGCA WAVELLPPDP QRQPQQELPL
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