| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3689 |
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| Symbol | |
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| ID | 5198783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4052392 |
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| End bp | 4054422 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640583245 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_001264173 |
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| Protein GI | 148556591 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCAA CCAAAATCCT TTGGGGTCAG GTCTTCGCGG TCTTCCTGAT CGTGCTCGCC
GCCCTGTGGA CCGCGACGCA ATGGACCGCC GCGGCGCTCG CCTATCAGCC CGAGCTTGGG
GCGCCCTGGT TCATGCTCGG CGACTGGCCG ATCTATCCGC CGCCGGCCTT CTTCTGGTGG
TGGTTCTCGT TCGACGCCTA CGCGCCGGAG ATATTCGAGA CGGGCGCGTT CATCGCCGTG
TCGGGCGGGT TCGCCGCGAT CGTCGTCGCC ATCGGCATGT CGGTATGGCG CGCGCGCGAG
CTGAAGAACG CCGAGACCTA CGGCTCGGCG CGCTGGGCGA CGCGCGGGGA GATCGCCGCC
GCCGGGCTGC TCGGGCCGAA CGGCCTCATG CTCGGCCGGC TCGGGCGCGA CTACCTGCGC
CACGACGGCC CCGAGCATGT GCTGTGCTTC GCGCCGACCC GGAGCGGCAA GGGCGTCGGC
CTCGTTGTGC CGACGCTGCT CACCTGGCCG GGCTCGGCCA TCGTGCATGA CATCAAAGGC
GAGAACTGGC AGCTCACCGC CGGCTTTCGC GCCCGGCACG CGCGGGTGCT GCTGTTCGAT
CCGACCAACG GCGCGTCGGC CGCCTACAAC CCTCTGCTCG AAATCCGCAA GGGCGCCTGG
GAAGTGCGCG ACGTGCAGAA CGTCGCCGAC GTGCTGGTGG ACCCGGAAGG CTCGCTGGAG
AAGCGAAACC ACTGGGAGAA GACCTCCCAC GCCTTGCTGG TCGGCACGAT CCTCCATGTC
CTCTACGCCG AGGCCGACAA GACGCTGGCG GGTGTCGCCG CCTTCCTGTC CGATCCCCGC
CGCCCGATCG AAAGCACCCT ATGGGCGATG ATGACGACGC CGCATTTGGG CGAGGCGGGC
GTCCATCCCG TCGTCGCTTC GGCCGCGCGC GAGCTGCTCA ACAAATCGGC CAACGAACGA
TCGGGCGTGC TCTCGACCGC CATGTCGTTC CTCGGCCTCT ATCGCGATCC CGTCGTCGCG
CAGGTCACGC GCACCTGCGA GTGGCGGATC AAGGATCTGG TCGAGGGCGA GCTGCCGGTG
ACGCTCTACC TCGTCGTGCC GCCGTCCGAC ATCTCGCGCA CCAAGCCGCT CATCCGCCTC
ATCCTCAACC AGATCGGCCG CCGTCTCACC GAAGACCTGA AGGCGCGGCA GTCGCGCCAC
CGGCTGCTCT TGATGCTCGA CGAGTTTCCC GCGCTGGGGC GGCTCGACTT CTTCGAGAGC
GCGCTGGCCT TCATGGCCGG CTACGGCATC CAGAGCTTCC TCATCGCCCA GAGCCTCAAT
CAGATCGAGA AGGCTTACGG GCCGAACAAC GCGATCCTCG ACAACTGCCA TGTGCGCGTG
TCGTTCGCCA CCAACGACGA ACGCACCGCC AAACGCATCT CGGACGCGCT CGGGACCGCC
ACCGAAATGC GCGCGATGAA GAACTACGCC GGCCACCGGC TCTCGCCCTG GCTCGGGCAT
CTGATGGTCT CGCGCTCCGA GACGGCGCGG CAGCTCCTCA CGCCCGGCGA AATCATGCAG
CTCCCGCCCG ACGACGAGAT CGTCATGGTC GCGGGCATCC CACCGATCCG GGCGAAGAAG
GTCCGCTACT TCAAGGACCG GCGGTTCACG CAGCGGGTGA CGTCGCCGCC CGACAGCAAT
GTCGGCGGCG GCCCGCCGCG TCCCGACGAC TGGAGCGGAC TGGCGCCGAT CGAGGCGCCG
CCGATGCCCG AGCCGATCGA GCATGAATCT CCCAAGAAGC CGAAGAAGAA AAAGGCCGCC
AGGAAGGCGG ATGCCGAGGA CGATGCCGCC AACGCGGACC TGCGCCGCGA GCCGGCGCTG
GAGCGCCATA TCGACATCGC GCCGACGCCC CGGCCGGCGC CCGCCAACGA GTTCGAGCTG
GACGAGCCGG ACCCCGATAG CGACGCGGCG CGGCAGGCGA CGGTGCGCCG CCAGATGCAG
CGCGTGGCCC GGCAGGCGTC GCTCGATCCC GACGACGGCA TCGAGCTATG A
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| Protein sequence | MSATKILWGQ VFAVFLIVLA ALWTATQWTA AALAYQPELG APWFMLGDWP IYPPPAFFWW
WFSFDAYAPE IFETGAFIAV SGGFAAIVVA IGMSVWRARE LKNAETYGSA RWATRGEIAA
AGLLGPNGLM LGRLGRDYLR HDGPEHVLCF APTRSGKGVG LVVPTLLTWP GSAIVHDIKG
ENWQLTAGFR ARHARVLLFD PTNGASAAYN PLLEIRKGAW EVRDVQNVAD VLVDPEGSLE
KRNHWEKTSH ALLVGTILHV LYAEADKTLA GVAAFLSDPR RPIESTLWAM MTTPHLGEAG
VHPVVASAAR ELLNKSANER SGVLSTAMSF LGLYRDPVVA QVTRTCEWRI KDLVEGELPV
TLYLVVPPSD ISRTKPLIRL ILNQIGRRLT EDLKARQSRH RLLLMLDEFP ALGRLDFFES
ALAFMAGYGI QSFLIAQSLN QIEKAYGPNN AILDNCHVRV SFATNDERTA KRISDALGTA
TEMRAMKNYA GHRLSPWLGH LMVSRSETAR QLLTPGEIMQ LPPDDEIVMV AGIPPIRAKK
VRYFKDRRFT QRVTSPPDSN VGGGPPRPDD WSGLAPIEAP PMPEPIEHES PKKPKKKKAA
RKADAEDDAA NADLRREPAL ERHIDIAPTP RPAPANEFEL DEPDPDSDAA RQATVRRQMQ
RVARQASLDP DDGIEL
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