Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3689 |
Symbol | |
ID | 5198783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4052392 |
End bp | 4054422 |
Gene Length | 2031 bp |
Protein Length | 676 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640583245 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001264173 |
Protein GI | 148556591 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGCAA CCAAAATCCT TTGGGGTCAG GTCTTCGCGG TCTTCCTGAT CGTGCTCGCC GCCCTGTGGA CCGCGACGCA ATGGACCGCC GCGGCGCTCG CCTATCAGCC CGAGCTTGGG GCGCCCTGGT TCATGCTCGG CGACTGGCCG ATCTATCCGC CGCCGGCCTT CTTCTGGTGG TGGTTCTCGT TCGACGCCTA CGCGCCGGAG ATATTCGAGA CGGGCGCGTT CATCGCCGTG TCGGGCGGGT TCGCCGCGAT CGTCGTCGCC ATCGGCATGT CGGTATGGCG CGCGCGCGAG CTGAAGAACG CCGAGACCTA CGGCTCGGCG CGCTGGGCGA CGCGCGGGGA GATCGCCGCC GCCGGGCTGC TCGGGCCGAA CGGCCTCATG CTCGGCCGGC TCGGGCGCGA CTACCTGCGC CACGACGGCC CCGAGCATGT GCTGTGCTTC GCGCCGACCC GGAGCGGCAA GGGCGTCGGC CTCGTTGTGC CGACGCTGCT CACCTGGCCG GGCTCGGCCA TCGTGCATGA CATCAAAGGC GAGAACTGGC AGCTCACCGC CGGCTTTCGC GCCCGGCACG CGCGGGTGCT GCTGTTCGAT CCGACCAACG GCGCGTCGGC CGCCTACAAC CCTCTGCTCG AAATCCGCAA GGGCGCCTGG GAAGTGCGCG ACGTGCAGAA CGTCGCCGAC GTGCTGGTGG ACCCGGAAGG CTCGCTGGAG AAGCGAAACC ACTGGGAGAA GACCTCCCAC GCCTTGCTGG TCGGCACGAT CCTCCATGTC CTCTACGCCG AGGCCGACAA GACGCTGGCG GGTGTCGCCG CCTTCCTGTC CGATCCCCGC CGCCCGATCG AAAGCACCCT ATGGGCGATG ATGACGACGC CGCATTTGGG CGAGGCGGGC GTCCATCCCG TCGTCGCTTC GGCCGCGCGC GAGCTGCTCA ACAAATCGGC CAACGAACGA TCGGGCGTGC TCTCGACCGC CATGTCGTTC CTCGGCCTCT ATCGCGATCC CGTCGTCGCG CAGGTCACGC GCACCTGCGA GTGGCGGATC AAGGATCTGG TCGAGGGCGA GCTGCCGGTG ACGCTCTACC TCGTCGTGCC GCCGTCCGAC ATCTCGCGCA CCAAGCCGCT CATCCGCCTC ATCCTCAACC AGATCGGCCG CCGTCTCACC GAAGACCTGA AGGCGCGGCA GTCGCGCCAC CGGCTGCTCT TGATGCTCGA CGAGTTTCCC GCGCTGGGGC GGCTCGACTT CTTCGAGAGC GCGCTGGCCT TCATGGCCGG CTACGGCATC CAGAGCTTCC TCATCGCCCA GAGCCTCAAT CAGATCGAGA AGGCTTACGG GCCGAACAAC GCGATCCTCG ACAACTGCCA TGTGCGCGTG TCGTTCGCCA CCAACGACGA ACGCACCGCC AAACGCATCT CGGACGCGCT CGGGACCGCC ACCGAAATGC GCGCGATGAA GAACTACGCC GGCCACCGGC TCTCGCCCTG GCTCGGGCAT CTGATGGTCT CGCGCTCCGA GACGGCGCGG CAGCTCCTCA CGCCCGGCGA AATCATGCAG CTCCCGCCCG ACGACGAGAT CGTCATGGTC GCGGGCATCC CACCGATCCG GGCGAAGAAG GTCCGCTACT TCAAGGACCG GCGGTTCACG CAGCGGGTGA CGTCGCCGCC CGACAGCAAT GTCGGCGGCG GCCCGCCGCG TCCCGACGAC TGGAGCGGAC TGGCGCCGAT CGAGGCGCCG CCGATGCCCG AGCCGATCGA GCATGAATCT CCCAAGAAGC CGAAGAAGAA AAAGGCCGCC AGGAAGGCGG ATGCCGAGGA CGATGCCGCC AACGCGGACC TGCGCCGCGA GCCGGCGCTG GAGCGCCATA TCGACATCGC GCCGACGCCC CGGCCGGCGC CCGCCAACGA GTTCGAGCTG GACGAGCCGG ACCCCGATAG CGACGCGGCG CGGCAGGCGA CGGTGCGCCG CCAGATGCAG CGCGTGGCCC GGCAGGCGTC GCTCGATCCC GACGACGGCA TCGAGCTATG A
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Protein sequence | MSATKILWGQ VFAVFLIVLA ALWTATQWTA AALAYQPELG APWFMLGDWP IYPPPAFFWW WFSFDAYAPE IFETGAFIAV SGGFAAIVVA IGMSVWRARE LKNAETYGSA RWATRGEIAA AGLLGPNGLM LGRLGRDYLR HDGPEHVLCF APTRSGKGVG LVVPTLLTWP GSAIVHDIKG ENWQLTAGFR ARHARVLLFD PTNGASAAYN PLLEIRKGAW EVRDVQNVAD VLVDPEGSLE KRNHWEKTSH ALLVGTILHV LYAEADKTLA GVAAFLSDPR RPIESTLWAM MTTPHLGEAG VHPVVASAAR ELLNKSANER SGVLSTAMSF LGLYRDPVVA QVTRTCEWRI KDLVEGELPV TLYLVVPPSD ISRTKPLIRL ILNQIGRRLT EDLKARQSRH RLLLMLDEFP ALGRLDFFES ALAFMAGYGI QSFLIAQSLN QIEKAYGPNN AILDNCHVRV SFATNDERTA KRISDALGTA TEMRAMKNYA GHRLSPWLGH LMVSRSETAR QLLTPGEIMQ LPPDDEIVMV AGIPPIRAKK VRYFKDRRFT QRVTSPPDSN VGGGPPRPDD WSGLAPIEAP PMPEPIEHES PKKPKKKKAA RKADAEDDAA NADLRREPAL ERHIDIAPTP RPAPANEFEL DEPDPDSDAA RQATVRRQMQ RVARQASLDP DDGIEL
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