| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3688 |
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| Symbol | |
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| ID | 5198782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4050401 |
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| End bp | 4052212 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583244 |
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| Product | Type IV secretory pathway VirD2 components (relaxase)-like protein |
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| Protein accession | YP_001264172 |
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| Protein GI | 148556590 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGGAAAT CCCGCACTGT GCGGCGCTGG CTGGAAACCA GCAGCGCGCA GGGTTTGCCG
CACATTGCGG CCTGTCCCGG CATGAGCCGC GACGACGATT TCCGCCTCCG GCCAGGCCGT
ATCCGCTCGC GCGGTAGCCA GCGGGCGCTG CCGATCATCG TCCAGGCACT CGCCGCCGCG
CAGCGGGCCG GCGGCCATGT CTCGCGCCGC GGCCGGATCG TCGCGCCGGG CCGCTCGACC
TTCGGCCGGG GCCGCGTGGC GAGCGTCCGC GCAACCCACC GGCTCGGCCA CCGATCGCGC
CAGGTCATCG TCAAGGCGCG CGTGGTCCGG CATGGCGGCC GCGCCTCGCT CGCGGCTCAT
CTCAACTATC TGCAACGCGA TGGCGTCACC CGCGACGGCG AGCGGGGCGT GCTGTTCGGC
GCCGAGGCCG AGGGTCTCGA CCGCAACGAG TTCGCAACGG TGTGCGAGAA CGACCGCCAC
CACTTCCGCT TCATCGTCTC GCCCGAGGAT GCGCCCCAGA TGGGCGACCT CAAGGGCTTC
ACCCGCGAGC TGATGACGCG CATGGAAAAG GATCTCGGCA CCCGCCTGGA CTGGCGGGCC
GTCGAGCATT GGAACACCGA CAATCCCCAC GTCCACATCA TAGTGCGCGG CGTCGGCGAG
GACGGGCAGA ACCTCGTCAT CTCGCGCGAC TATATCCGCG AGGGGATGCG GGCGCAGGCG
CGCGAGATCG TCACCCAGGA ACTCGGCCCG CGCACCGACC TTGAAATCCG GCAATCGCTG
GAGCGGCAGG TCGAAGCCGA GCGCTGGACC GAGATCGACC GCGACCTTTC GCGGACCATG
CAGCGCAACG GCCTGATCGA CATGGCGCCC GAGCCCGGCG TCCGGCCGGA CGGCGACCAT
GTGCTGAGGA TGGGACGGCT GCGCAAGCTG GAGCGGCTCG GCCTCGCCAG CGAGATCGCG
CCCGGCCAGT GGACGCTGGC CGGCGATGCC CAGGCGGCGC TGCGCGAACT CGGCGAGCGC
GACGACATCA TCAAACGGAT GCACAAGGCG ATGAGCGACC GCGGCATCGA CCGGGGCGCC
GGCAGCTATG TCCTCGACAC CGATCCCGCT CAGCCCGTTG TCGGCCGGCT GGTCGATCGC
GGCCTGCATG ACGAGCTGAC CGGCAAAGCC TATGCGATCG TGGACGGGAT CGACGGGCGC
ACCCACCATG TCCAGCTTCC CGACATCGAG GCGACCGGCG ATTGCCGGCC GGGCGCGATC
GTCGAGCTGC GCCGCTTCGA GGACCGGAAA GGCCGGCAGC GGGTGGCGCT CGCCGTGCGC
TCCGACATGG ACCTTGAGGC GCAGGTCCGC GCGCCGGGGG CGACCTGGCT CGACCGGCGC
AACCTCGCGA GCGACGGCCA TGATCTCGGC GGCGGCTTCG GGACCGAGGT GCGCGCCGCG
ATGGAGGCCC GCGCCGAGCA TCTCGCCGAC GAGGGGCTCG CGCGGCGGCA GGGACAGCGG
ATCATCTTCG CGCGCAATCT GCTCGACACG CTCCGCCGCC GCGAGCTGGA CGCGGCCGCC
AAGGATTTGT CGGCCGAGAT CGGCCTGCCG CACGCGCCGT CCAAGGCCGG GGAGTATGTC
GCGGGCACGG TGCGCCAGCG GATCACGCTC GCCTCGGGGC GCTTCGCGAT GATCGACAAC
GGCCTGAGCT TCCAGCTCGT GCCCTGGTCG CCCTCGCTCG ATCGGCAGAT CGGCAAGCAC
ATCTCCGGCG TCATGCGCGC GGGCGGGGGC GTCGATTGGT CGTTCGGACG CGGCCGGGGG
CTGGGCCTGT AG
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| Protein sequence | MRKSRTVRRW LETSSAQGLP HIAACPGMSR DDDFRLRPGR IRSRGSQRAL PIIVQALAAA
QRAGGHVSRR GRIVAPGRST FGRGRVASVR ATHRLGHRSR QVIVKARVVR HGGRASLAAH
LNYLQRDGVT RDGERGVLFG AEAEGLDRNE FATVCENDRH HFRFIVSPED APQMGDLKGF
TRELMTRMEK DLGTRLDWRA VEHWNTDNPH VHIIVRGVGE DGQNLVISRD YIREGMRAQA
REIVTQELGP RTDLEIRQSL ERQVEAERWT EIDRDLSRTM QRNGLIDMAP EPGVRPDGDH
VLRMGRLRKL ERLGLASEIA PGQWTLAGDA QAALRELGER DDIIKRMHKA MSDRGIDRGA
GSYVLDTDPA QPVVGRLVDR GLHDELTGKA YAIVDGIDGR THHVQLPDIE ATGDCRPGAI
VELRRFEDRK GRQRVALAVR SDMDLEAQVR APGATWLDRR NLASDGHDLG GGFGTEVRAA
MEARAEHLAD EGLARRQGQR IIFARNLLDT LRRRELDAAA KDLSAEIGLP HAPSKAGEYV
AGTVRQRITL ASGRFAMIDN GLSFQLVPWS PSLDRQIGKH ISGVMRAGGG VDWSFGRGRG
LGL
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