| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3685 |
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| Symbol | |
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| ID | 5198779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4048425 |
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| End bp | 4049003 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583241 |
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| Product | Type IV secretory pathway protease TraF-like protein |
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| Protein accession | YP_001264169 |
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| Protein GI | 148556587 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02771] conjugative transfer signal peptidase TraF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCGCC GCCGCTACGT CATGGCGATG GCCATCGCCG CATCCGCCTT CGCCGCGGCG
TTCGTCGCTA TCGCCGTCGC CGATCCGCTC CCGCGCGCCA TCTGGAATGC CAGCGCCAGC
GCGCCCATCG GCCTCTATCG CATCCATCCC AACCGCGATC CCGCCATCGG CGCGCTGGTC
GCCGTCGCGC CGCCCGAACG GCTGGCGCAT TGGCTTTCGG CGCGCGGCTA TCTGCCCGAG
GGCGTGCCGC TCTTGAAGCA TGTCGCGGCT AAAGCCGGGC AGCGGACGTG CCGGATCGGC
GATGCGGTGA GCGTTGATGG CCGGCGCGTC GCCATCGCCC GCGCGCGCGA TGGCCAGGGC
CGACCGCTGC CGGTCTGGCA GGGGTGCCGC ACGCTCCAAT CGGGCGAACT GCTGCTGCTC
AATCCCGCCC ATCCCGACAG TCTGGATGGC CGCTATTTCG GCCCGCTGCC GGCCTCCGCC
GTCATCGGAC GCGCCACGCC GCTCTGGCTG CGCGCGCCGT CCCCAACACC TTCCACCCCT
GAAGCCAAGG AGATCGGCCA TGCAAACCAA CATCTTTGA
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| Protein sequence | MTRRRYVMAM AIAASAFAAA FVAIAVADPL PRAIWNASAS APIGLYRIHP NRDPAIGALV
AVAPPERLAH WLSARGYLPE GVPLLKHVAA KAGQRTCRIG DAVSVDGRRV AIARARDGQG
RPLPVWQGCR TLQSGELLLL NPAHPDSLDG RYFGPLPASA VIGRATPLWL RAPSPTPSTP
EAKEIGHANQ HL
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