Gene Swit_3608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3608 
Symbol 
ID5197346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3967547 
End bp3968302 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content73% 
IMG OID640583163 
ProductHAD family hydrolase 
Protein accessionYP_001264092 
Protein GI148556510 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1877] Trehalose-6-phosphatase 
TIGRFAM ID[TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.103192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTCCC GGTCCCATCA GCCGGCGCTT GCGCCCCCGC CGGCGATCGA TCCAGCGAGC 
CATAGTCTTT TCGTCGATTT CGACGGGACG CTGGTGCCGC TCGTCGATCA TCCGGAACTG
GTGCGCGCCG ACGCCGAACT GGTCGAGCTG CTGACGACGC TGCACCGGCG CTTCGCCGGG
CGGGTCGCGC TGGTCAGCGG CCGATCGATC GCCCAACTCG ATCAGATGGT CGGGCCGATC
GCCGCCGGGA TCGCCCTCGC CGGCAGCCAT GGCGCCGAGG TGCGCCGCGA CGGCCGGCTG
ATCGAGCCGC CCAGGCCCGA GGGACTCGAC GGCGCGATCG CCGACGTCCG GCTGTACGGC
GCCGGCCATC CCGAGATGAT CATCGAGGAG AAGAGCCACG GCGTGGCGAT GCACTATCGC
GTCGCGCCGA TCCTGGAGGA ACCGGTCAAG CGCCGCGCCC AGGCGATCGC CGAGCGCCAC
GGCCTGATCG TCCAGCCCGG CAAGATGATG GTCGAGCTGC GCGGCGCCGG CTGGAACAAG
GGCGAGGCGG TCGAGGCGCT GATGGCCGAG CCGCCGATGG CGGGCAGCCG CCCCGTCGTG
ATCGGAGACG ACCTGACCGA CGAGCCCGCG CTCGCGGTGG CGGGCGCGAT GGGGGGCTTC
GGCGTGCTGG TCGGCCCCGG CCGCGAGAGC GCCGCGCTCT ACGGCCTCGC CGACGTCGGG
TCGGTGCGCC GCTGGCTGTG GGAGGTCGCC GCGTGA
 
Protein sequence
MLSRSHQPAL APPPAIDPAS HSLFVDFDGT LVPLVDHPEL VRADAELVEL LTTLHRRFAG 
RVALVSGRSI AQLDQMVGPI AAGIALAGSH GAEVRRDGRL IEPPRPEGLD GAIADVRLYG
AGHPEMIIEE KSHGVAMHYR VAPILEEPVK RRAQAIAERH GLIVQPGKMM VELRGAGWNK
GEAVEALMAE PPMAGSRPVV IGDDLTDEPA LAVAGAMGGF GVLVGPGRES AALYGLADVG
SVRRWLWEVA A