Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3608 |
Symbol | |
ID | 5197346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3967547 |
End bp | 3968302 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 640583163 |
Product | HAD family hydrolase |
Protein accession | YP_001264092 |
Protein GI | 148556510 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1877] Trehalose-6-phosphatase |
TIGRFAM ID | [TIGR00685] trehalose-phosphatase [TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.103192 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTCCC GGTCCCATCA GCCGGCGCTT GCGCCCCCGC CGGCGATCGA TCCAGCGAGC CATAGTCTTT TCGTCGATTT CGACGGGACG CTGGTGCCGC TCGTCGATCA TCCGGAACTG GTGCGCGCCG ACGCCGAACT GGTCGAGCTG CTGACGACGC TGCACCGGCG CTTCGCCGGG CGGGTCGCGC TGGTCAGCGG CCGATCGATC GCCCAACTCG ATCAGATGGT CGGGCCGATC GCCGCCGGGA TCGCCCTCGC CGGCAGCCAT GGCGCCGAGG TGCGCCGCGA CGGCCGGCTG ATCGAGCCGC CCAGGCCCGA GGGACTCGAC GGCGCGATCG CCGACGTCCG GCTGTACGGC GCCGGCCATC CCGAGATGAT CATCGAGGAG AAGAGCCACG GCGTGGCGAT GCACTATCGC GTCGCGCCGA TCCTGGAGGA ACCGGTCAAG CGCCGCGCCC AGGCGATCGC CGAGCGCCAC GGCCTGATCG TCCAGCCCGG CAAGATGATG GTCGAGCTGC GCGGCGCCGG CTGGAACAAG GGCGAGGCGG TCGAGGCGCT GATGGCCGAG CCGCCGATGG CGGGCAGCCG CCCCGTCGTG ATCGGAGACG ACCTGACCGA CGAGCCCGCG CTCGCGGTGG CGGGCGCGAT GGGGGGCTTC GGCGTGCTGG TCGGCCCCGG CCGCGAGAGC GCCGCGCTCT ACGGCCTCGC CGACGTCGGG TCGGTGCGCC GCTGGCTGTG GGAGGTCGCC GCGTGA
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Protein sequence | MLSRSHQPAL APPPAIDPAS HSLFVDFDGT LVPLVDHPEL VRADAELVEL LTTLHRRFAG RVALVSGRSI AQLDQMVGPI AAGIALAGSH GAEVRRDGRL IEPPRPEGLD GAIADVRLYG AGHPEMIIEE KSHGVAMHYR VAPILEEPVK RRAQAIAERH GLIVQPGKMM VELRGAGWNK GEAVEALMAE PPMAGSRPVV IGDDLTDEPA LAVAGAMGGF GVLVGPGRES AALYGLADVG SVRRWLWEVA A
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