Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3580 |
Symbol | |
ID | 5199577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3942286 |
End bp | 3944793 |
Gene Length | 2508 bp |
Protein Length | 835 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640583135 |
Product | TonB-dependent receptor |
Protein accession | YP_001264064 |
Protein GI | 148556482 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCTTC AAGAAAGATC CGCCGTGAAC ATCCAAGGAC ATCTACCCGT CTCCTCCCGC CACGATCCGC GCCTTCCCGC GTCGCGGCGG CGGGCGCCGA ACAAGGCCCG CCTCTATCTG GGCCTGGCGT CGATCGGACT GCTGGGCTGG CAGAACCCGG CGCAGGCCGA GGACCAGCCG GACGAGCAGG ACTCGATCGT GGTCGTCGGC TCGCGCAGCG GCAATGCCCG CGCGCTCGAA AGCTCCGCGC CGATCCAGGT CGTCGGCGGC GACACCCTGC GCGACACCGG ATCGCGGACC CTGTCGGAAG CGCTGCAGCG GACCGTGCCC TCGTTCAACT TCCCGACCTC GGTGCCGTCG TCGAACGCCG CCAGCTTCGT CAAGGGCGTG TCGCTGCGCG GCCTCGCCGC CGACCAGACG CTGGTGCTGA TCAACGGCAA GCGCCGCCAT GCGACGGCGC AGCTCAACGC CGGCGGCGGC ACGACCAAGG GCGCCCAGAC GGTCGACCTC AACAGCATCC CGCTGAGCGC GGTGGAGCGG GTCGAGGTGC TGCTCGACGG CGCGTCGGCG CAATATGGAT CGGACGCGGT CGCCGGCGTC GTCAACATCG TCCTGAAGCA GGGCAGCGAG GGCGGCGACA TCGCGCTGCT CTACGGCATC AACGACAAGG GCGACGGCAA GACCAAGAGC GTCGAGGGAT CGTTCGGCCT GAAGCTTCCG GGCGACGGCT TCGTCCGCTT CGCCTTCGAC GCGTGGGACA TCGGGCGCAC CCGCCTGTCG GTGCCCGACA CCCGCCAGAT GTATTTCGCC GGCGACCCGC GCGAGGCGAG CTATCCGAAC CGCGACTGGT TCTACGGCAG CGGCGCGACC AAGCGGCAGA ACATCTTCAT CAACGGCGAG ACCACCGTCG GCGGGGTGAC CTTCTACGCG CAGGGCAGCT ATGGCTGGCG CAAGGACGAG GGCTTCGGCA ATCTTCGCCA GCCCAATTCC GACCAGACGG TGCGCGCTCT GTTCCCGGAC GGGTTCCAGC CCTTCCTCCA CATCCGGTCG CGCGACGCCG CCGCCGCCGT GGGGGGGCGC TGGGGCTCGG CCGCCGCGGG CGATTTCGAC CTGAGCGCCA ATTACGGCCG CAACCGGGTC AAGAGCGTGG TGTCGAACAC CAACAACGCC AGCCTCGGCA CCGCCAGCCC GACCGCGTTC GACACCGGCG ACCTGCTGAA CGAGCAGACC AACGTCAACT TCGACTGGAA GCGCCCGTTC GCCGTGGCGT TCCTGCCGAC CCCGCTCAAC GTCGCCGCCG GCCTGACCTA TCGGCACGAG GCCTATGAGG TGTTCGAGGG CGACTATGGC TCCTGGGCCA ATGGCGGCGT GCCGATCCTC GACGGCCCCA ATGCGGGCAA GGTGGCGACG CCGGCTTCGC AGGGCTTCGG CGGCTTCTCG CCCGACGATG CCGGGCGCCT CTCCCGCAAT GTCTATGGCG GCTATCTGGA GCTGGAGAAT TCGCCGACTG AGAAGCTGCG GATCACCCTG TCGGGCCGGT TCGAGCATTA TTCGGACTTC GGATCGACCA CCAACGTCCG GCTGGCGACC CGCTACGAGC TCACGCCGAC GCTGGCGTGG CGGTTCAGCG CGGGCACCGG CTATCGCGCG CCGTCGCTGG GCCAGTCGGC CTATTCGCGC ACCATCCCGA ACATCACCAA CGGCGTGCTC GCCACCAACC GCCTCGCCCG GGTCGACAGC GTGGAGGCCC GCGCGCTGGG CGCGACGGCG CTCAAGCCCG AAAAGTCGGT CAACCTGTCG ACCGGCTGGG TATGGACGCC CAGCCCGGCC TTCTCGGCGA CACTGGACGT CTACCAGATC AGCATCGACG ACCGGATCGT CCTGTCGGAG ACGCTGACCG GGGCGCTGGT CCGCCAGGTG TTGGCCAATG CCGGCTTCCC GACCTATTCG GGCCTGCAAT ATTTCACCAA CGCGGTCGAC ACCCGGACCC GCGGCATCGA CGCCACGGCC CGCTACCGGT TCAATCTGGC GTCGGGCGCC AGGCTCGACC TGAGCGCCGG CTTCAACTGG AACGAGACCA AGATCACCCA CGTCAAGGAC ACGCCCGCCG TGCTGAGCGG CAGCGGGCTC GTCCTGATCG GGCGCGAGGC CTCGTCGCTG ATCGAGGAGG CGAACCCCGA TACCTTCCTG CGGCTGGCGG CCGACTATGG CGCGGGGCCG TTCGAGGCCC ATCTCTCCGG CGTGCGCTAC GGCGTCTACC GGACCCGCCA CACCAGCAAC CCGGCCTTCG ACCAGCGCTA CGGCCCGCAG GTCGTGGTCA ATATCGCCGC CGGCTACGCG CTGTTCGAGG GGGTCAAGCT GTCGGCCGGC GTCAACAACC TGTTCGGCAG CCATCCCGAC AAGGTCCTGA CCGCGATCCG CAACCCGGTC GTCTCGGTCT ATTCGGGCCT GTCGCCCGAG GGCGGCGCCG GCCGCACCTA TTTCGCCCGC CTCGGTTATT CCTTCTGA
|
Protein sequence | MSLQERSAVN IQGHLPVSSR HDPRLPASRR RAPNKARLYL GLASIGLLGW QNPAQAEDQP DEQDSIVVVG SRSGNARALE SSAPIQVVGG DTLRDTGSRT LSEALQRTVP SFNFPTSVPS SNAASFVKGV SLRGLAADQT LVLINGKRRH ATAQLNAGGG TTKGAQTVDL NSIPLSAVER VEVLLDGASA QYGSDAVAGV VNIVLKQGSE GGDIALLYGI NDKGDGKTKS VEGSFGLKLP GDGFVRFAFD AWDIGRTRLS VPDTRQMYFA GDPREASYPN RDWFYGSGAT KRQNIFINGE TTVGGVTFYA QGSYGWRKDE GFGNLRQPNS DQTVRALFPD GFQPFLHIRS RDAAAAVGGR WGSAAAGDFD LSANYGRNRV KSVVSNTNNA SLGTASPTAF DTGDLLNEQT NVNFDWKRPF AVAFLPTPLN VAAGLTYRHE AYEVFEGDYG SWANGGVPIL DGPNAGKVAT PASQGFGGFS PDDAGRLSRN VYGGYLELEN SPTEKLRITL SGRFEHYSDF GSTTNVRLAT RYELTPTLAW RFSAGTGYRA PSLGQSAYSR TIPNITNGVL ATNRLARVDS VEARALGATA LKPEKSVNLS TGWVWTPSPA FSATLDVYQI SIDDRIVLSE TLTGALVRQV LANAGFPTYS GLQYFTNAVD TRTRGIDATA RYRFNLASGA RLDLSAGFNW NETKITHVKD TPAVLSGSGL VLIGREASSL IEEANPDTFL RLAADYGAGP FEAHLSGVRY GVYRTRHTSN PAFDQRYGPQ VVVNIAAGYA LFEGVKLSAG VNNLFGSHPD KVLTAIRNPV VSVYSGLSPE GGAGRTYFAR LGYSF
|
| |