| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3563 |
|---|
| Symbol | |
|---|
| ID | 5199535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3923949 |
|---|
| End bp | 3925532 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583118 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001264047 |
|---|
| Protein GI | 148556465 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.908991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCACC TGCAGAAGGA AGACACCAAG CTGATGGTGG CCGTCCATGG CTGGTCGGGC
ATCATCCTCG GCCTGTTGCT CTATGCGGTG GTCGTCACCG GCATGGTGGC GGTGTTCGCC
GAGGAGATCG GCATATGGTC GGCCGGGCAT GTCGAGACCA GCTCGGCGTT CGAGCGGCCG
ATCGACGCCA CGGTGCGCGA GCTCGGCCGG CGCACCCCCG CCAGATATCA TGAGGGCGCC
GACCTGTTCG AGATCGGCGA TCACAATCTC GGCGTCTTCT TCCACCGGCA CGAGACCGAC
GCCGACGGCG ATCTCGTCGC GCGCGGCATC TATTACCAGC TCGATCGCGA CGGCCGGATC
GCCAGCGAAC GGCACGGCAC CGGCGAGGAG GTGTTCGGCC CGCGCAACGA CGACGCGCTG
AGCAGCTTCC TGGTCGACAC CCATGTCCGC CTCCACGTCC CCGACCCCTG GGGGCTGATC
CTCACCGGCA TCCTCGGCCT CGCCATGCTG GTCGCGGCGG TCTCGGGCCT GCTGATCCAC
CGGCACCTGT TCAAGGACAT CTTCACGCTG CGGCGGAAGG CCAATCCGGT GCTGGTCGAC
CGCGACCGCC ACAGCGTCGC CGGCACCTGG AGCCTGCCTT TCGCCTTCCT GCTCGCCTTC
ACCGGCAGCT TCTTCTCCTT CTTCGGCACG ATCGGCGTGC CGATCGTCGC GATGGCGGCG
TTCGGCGGCG ACGTGCAGGC GCTTAACGAC GCCGTGTTCG GCAACCCGGC CAAGCCCGAC
ACGCGGATCG TCGGCGTCGG CAATCTCGAT CGCATCACCG TCGATTCGAT CCGGCGGACG
GGCGAGGCGC CGACCTTCGT CACGATCGAG AATTTCGGCC GCGCCGATTC GCAGGTGACC
AGCTTCCATC CGCCGCGCGA GCGCGGGCTG GAGCCGCAGA CCCTGCTCTA CAGCGGCGTC
ACCGGCGCGT TCGAGCGGGT CAAGCCGTCG ATCGGTACCC GGCCCTCGGC CGGCGGCACC
CTGGCGGCGG TCATGGCGCC GATCCATTTC GGCAATTTCG CCGGGATCGT CTCCAAGGCG
GTGTGGTTCG GGCTGGGCTT CGCGATGTGC TACGTCACCC TGACCGGGCT GCGCCTGTGG
CTGGCGCGCC GCCGCGAAGG CGCCCGCTCG CTCGGCTGGC TCGAACGCGC CGTGACGGTG
GTCGGCTTCG GCCTGCCCTT CGCGCTGCTG GTGTCGGCCG CGGCCTTCCT GGTCGCGATG
CCGCTGGGCG GCGCGGTGTT CTGGACCCCG GCGGCGTTCG TCGGCGCCTG CCTGCTCGCG
ATCCTCGGCG GCGTCGTGCT GCGCTCCAAC GCGCTGCTCG ACGCGATCGT GCAGAGCGCG
AGCGCGGCGA TCATGATCGC GCTGCCGATC CTGCGCCTTG CGACGGGCGG TCCCGGCTGG
GCGCGCTCGA TCGAGGCCGG CCAGCCGGTG ATCGTCGCGC TCGACATCGC CTTCGTGCTG
GCGGGCGGCT GGATGCTGTG GCGCCTCCAT GGCGATCGCC TGCGCCGGGC CGCCACCGCG
CCCGCGCTCC AGCCGGCGGA GTGA
|
|---|
| Protein sequence | MIHLQKEDTK LMVAVHGWSG IILGLLLYAV VVTGMVAVFA EEIGIWSAGH VETSSAFERP
IDATVRELGR RTPARYHEGA DLFEIGDHNL GVFFHRHETD ADGDLVARGI YYQLDRDGRI
ASERHGTGEE VFGPRNDDAL SSFLVDTHVR LHVPDPWGLI LTGILGLAML VAAVSGLLIH
RHLFKDIFTL RRKANPVLVD RDRHSVAGTW SLPFAFLLAF TGSFFSFFGT IGVPIVAMAA
FGGDVQALND AVFGNPAKPD TRIVGVGNLD RITVDSIRRT GEAPTFVTIE NFGRADSQVT
SFHPPRERGL EPQTLLYSGV TGAFERVKPS IGTRPSAGGT LAAVMAPIHF GNFAGIVSKA
VWFGLGFAMC YVTLTGLRLW LARRREGARS LGWLERAVTV VGFGLPFALL VSAAAFLVAM
PLGGAVFWTP AAFVGACLLA ILGGVVLRSN ALLDAIVQSA SAAIMIALPI LRLATGGPGW
ARSIEAGQPV IVALDIAFVL AGGWMLWRLH GDRLRRAATA PALQPAE
|
|---|
| |