| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3514 |
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| Symbol | |
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| ID | 5196253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3870037 |
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| End bp | 3871332 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583069 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001263998 |
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| Protein GI | 148556416 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.91039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.283922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCCGGC TTCTTTCAAC CGCGCTCGTC GCCGCCGTCG CCCTGATCGG GCCGGCCGCC
GCGACGGCCG CCGAGGACAG TCTGTCGCTC CAGCTCAGGG TGAAGCGCGT CCTCGACTAT
CCCAAGCCGA TCGCGCGCAT CCAGGTCGAC CGCGAGGGCG TGATCGCGGT GCGCGCGCCG
AGCCGCCGCT CGCTCGGCGT CACCGCGATC GGCACCGGCC TCGCGACGCT GTCGGTGTTC
GCCGCCGACG GCTCGCTGAT CGGCCGGACG GCGATCTCGG TCGGGCTGCC GGGCGGCGCA
ACCGGCGACG TCCGCGCCGA CGAGGATGAC GGATCGCTGT CCGGCACGGT CGACGGCCTC
GCCGCGCGCG CCGCGCTCCA GCGGAGCTCC GCCGACCGGG GCGCGGCCAA CAGCCTCTCG
GTGAACGGCG AGCAGGTCGT CGCCGTCGAC GTCCAGTTCG CGGCGGTCTC CTCGTCGACC
TTGCGCGCGC TGGGCTTCAA CTTCTCCAAG CTGAGCGGCG ACCTCCAGGG CGCGATCGTC
TCGCCGGCGA CGCTGGGCAA TTTCTCCAGC ACCTCGACCG GCCTGACGCT CGACACCACC
GCGCCGTTGC AGAACGCCTT CAACCTGTTC CTCTCCGCGC CCAATCGCGG GATCACCGCG
GTGCTGAGCG CGCTGTCGAG CAACGGCCTG TCGCAGCTCC TCGCCCAGCC GACCCTGCTG
GTCCGCTCGG GCGAGCAGGC GAGCTTCCTG GCCGGCGGCG AGGTCCCGAT CCCCGTCCCG
CAGAACAACG GCAACGGCAA CGGGATCGGC ATCGAGTACA AGGAGTTCGG CGTCCGGCTG
AAGGTGACGC CCTTCGTGCT GAGCAAGGAC CGCATCGTCC TGAAGATCGC GCCCGAGGTC
AGCGAACTCG ACTATACCAA CGGGGTGCGG CTGCAAGGCT ATGTGGTCCC GGGCCTGCGC
CGCCGCTCGA CCGAGACGAC CGTGCAGCTC GGCAGCGGCC AGAGCTTCGT GATCGCCGGC
CTCACCTACA GCAATTCGGT GGTGAGCAAG GAGAAGACGC CCTTCCTCGG CGATCTCCCG
GTGCTCGGCG CGCTGTTCAA GCGCCAGCAG AACCAGCGCG AGAGCCAGGA GCTGATCATC
GTCGCGACGC CGCGGCTGGT CGGCCCGATG GACCCGAGCC GGATACCGCC GTTGCCCGGC
ACCACCAACG AGGTCGACCC GACGATCGGC GACATGATCG TCGGCACCGA CGGCCTCGAA
CAGAGCAGGG CGCCGTTCGG CGTGGTGAGG CGTTGA
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| Protein sequence | MTRLLSTALV AAVALIGPAA ATAAEDSLSL QLRVKRVLDY PKPIARIQVD REGVIAVRAP
SRRSLGVTAI GTGLATLSVF AADGSLIGRT AISVGLPGGA TGDVRADEDD GSLSGTVDGL
AARAALQRSS ADRGAANSLS VNGEQVVAVD VQFAAVSSST LRALGFNFSK LSGDLQGAIV
SPATLGNFSS TSTGLTLDTT APLQNAFNLF LSAPNRGITA VLSALSSNGL SQLLAQPTLL
VRSGEQASFL AGGEVPIPVP QNNGNGNGIG IEYKEFGVRL KVTPFVLSKD RIVLKIAPEV
SELDYTNGVR LQGYVVPGLR RRSTETTVQL GSGQSFVIAG LTYSNSVVSK EKTPFLGDLP
VLGALFKRQQ NQRESQELII VATPRLVGPM DPSRIPPLPG TTNEVDPTIG DMIVGTDGLE
QSRAPFGVVR R
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