| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3507 |
|---|
| Symbol | |
|---|
| ID | 5197765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3863087 |
|---|
| End bp | 3864808 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583062 |
|---|
| Product | membrane-like protein |
|---|
| Protein accession | YP_001263991 |
|---|
| Protein GI | 148556409 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4655] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.581776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.316672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC GGCTCGGCTC CCTCTGGTCC GACCGGTCGG CCGCCGTCGC GCCGATCGTC
GCCGTGCTCG GCGCGAGCCT GGTCTGCACG GCCGGGATCG CGCTCGACGT GGGCGCCTTC
TATTCGGGCA GCAAGCGGCT CAAGGCCGCG ACCGAGGCCG CCGCGCTCTA TGCCGCGGGC
AACCCCGCCA ACGCGCTGTC GCGGGCGCAG GACTATCTCC AGCGCAACGG CTATCCGTCG
AGCGTCATCC AGTCGATCCA GGCGGGGCGC TACTGCCCCG ACAAGAGCCT CGCGCCGACC
GGCCGCTTCT TCGCCAGCGC CGCCGCGAGC CCCTGCCCCG GCAACGGCCA GACCAACGCC
GTGCGGCTGA AGACCAGCCA GCCCAGCAGC CAATATATGC TGGCGCTGCT CGGCAACGCC
TCCCCCATTC CCAACCTCGC CGCGACCGCC ACCGCCGCCA AGATCGACGA GGCCGGGGTG
CAGGTGTCGT CGGGCGTGCT CGGCCTCAGC AACGGCGTGG TCAACCAGCT CCTCACCCTG
CTGACCGGCC GCAACATCGC GCTCACCGGC GCCCAGATCA CGACGCTGAT GGGCAGCGAC
ATCGACATGG GCCTGTTCAT GGACAAGCTG GCGGCCCGCG CCGGCCGGAC CGGGACCTAT
GCCGAGCTGC TGAGCAGCCC GATCGCCTTC TCCGACGTGC TCGGCGCGGC CGGCGACGCC
GCCGCGGTCG CCGGTTCCAC CCCGACCAGC ACGCTGCTGC TCAACCTGTC GGCGCAGGTC
GGCAGCGCCT ACAAGGTCAA GCTGACCGGC CTCGCCGATC TCGGCGTCTG GGAGAAGATG
CCGGTCGGCA ACGCCCAGGC CCAGACCTCG CTGCGCGCCG GGATCAACGC CTTCCAGCTG
CTCAACTATG CGCTGCTCGC CGGCGGCCAG CCGCCATCGC TGTCGCTGAC CCCGGCGGTG
CGGCTGGCGG GCATGACGAC CGACGTCCTG TCCAATCCGC GCTTCGGCTA TGGCCCGGCC
AACGAGACAA GCGCCTACAC CGCCGTGACG CGACTGCGCC TCGACGTCGA CGTCGATCTG
GGCATTCTCG GCACCGTCCT CTCGCTCATC GGCGCCGGAT CGATCGTCAA GGTTCCCGTC
CTCATCGAAA TCGGCTCCGG TTCCGCGAGT GTCGCTAACA TCCAGTGCAC GTCCGAGGCC
GACACCGATT CCGTCGTCAC CGTCAACGCG CGGGCCAGCC TGCTAAAGGC CTATATCGGG
ATACCCCGTA CCGACCCTCT GGCATTGCCG TTCAAGCCGC TGAGCGGCGC CGATTTCGAT
GACGCCTACA TATTGCTGGG CTTGATCAAG CTGAAGTCCG TGGTCGAGGA TCCCATCGCC
GCCGCCCAGC CCGTCACCTT CAGCCGCGCG AACGGAACCA TCGGCAGGCC CGCCTCCGCC
AGCAAGCCGG GCATTGCCGG CGCGTCCGTC AGGGTGGTCA GCGGATCGCA GCTCGGTTCG
CTCGTGGCAT CGCTTGGAAC CAATCTGCAG GTCAACCTTG GCGGAGTAAG CCTTCTCAAC
GGCCTGCTGA ACCTCCCCCT CATCAAGACG ACGGTCGCCG GCGTGCTGAG CGCAACCGTG
GACCCGCTGG TGACCAGCCT GCTCGCCACG CTGGGGGTTC AGGCAGGCTA TGCGAACATC
TGGACCACCG GCGTACGCTG CGGGGTGCCC GTGCTGGTCT GA
|
|---|
| Protein sequence | MIARLGSLWS DRSAAVAPIV AVLGASLVCT AGIALDVGAF YSGSKRLKAA TEAAALYAAG
NPANALSRAQ DYLQRNGYPS SVIQSIQAGR YCPDKSLAPT GRFFASAAAS PCPGNGQTNA
VRLKTSQPSS QYMLALLGNA SPIPNLAATA TAAKIDEAGV QVSSGVLGLS NGVVNQLLTL
LTGRNIALTG AQITTLMGSD IDMGLFMDKL AARAGRTGTY AELLSSPIAF SDVLGAAGDA
AAVAGSTPTS TLLLNLSAQV GSAYKVKLTG LADLGVWEKM PVGNAQAQTS LRAGINAFQL
LNYALLAGGQ PPSLSLTPAV RLAGMTTDVL SNPRFGYGPA NETSAYTAVT RLRLDVDVDL
GILGTVLSLI GAGSIVKVPV LIEIGSGSAS VANIQCTSEA DTDSVVTVNA RASLLKAYIG
IPRTDPLALP FKPLSGADFD DAYILLGLIK LKSVVEDPIA AAQPVTFSRA NGTIGRPASA
SKPGIAGASV RVVSGSQLGS LVASLGTNLQ VNLGGVSLLN GLLNLPLIKT TVAGVLSATV
DPLVTSLLAT LGVQAGYANI WTTGVRCGVP VLV
|
|---|
| |