| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3490 |
|---|
| Symbol | |
|---|
| ID | 5199357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3838985 |
|---|
| End bp | 3839836 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640583039 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_001263974 |
|---|
| Protein GI | 148556392 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.376649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATAT TGGGACATGA GGTCGGGCTC GACGAGCCTT TGTTCGTCAT CGCCGGCCCC
TGCGTGATCG AGTCCGAGGC GCTGGTCCTC TCGGTCGCCG AGCGGCTCCG CGCCATCGCC
GACCGGCTCG GCCTGTTCGC GATCTTCAAG AGCTCGTTCG ACAAGGCCAA CCGCAGCTCG
GGCGCCTCCT TCCGCGGGCC CGGCCTCGAC GACGGCCTGC GCATCCTCGA GAAGGTCCGC
GCCGAGACCG GCCTGCCGGT GCTGACCGAC GTCCACGACG TCGACCAGGT CCGCGCCGCC
GCGCAGGTCG TCGACGTCCT CCAGACCCCC GCCTTCCTCG CGCGGCAGAC CGACCTGATC
GAGGCGGTCG GCGCGTCGGG CCGGGTCGCC AACATCAAGA AGGCGCAGTT CATGGCGCCG
CACGACATGG CCCATGTCGT CGCCAAGGCG CAGGGCGCGG CGCGGGCGGC CGGGGTCGAG
ACGCCGGTGC TGGTCACCGA GCGCGGCACC TCCTTCGGCT ACAACAACCT CGTCACCGAC
CTGCGCGGCC TCGCCATCAT GCGCGACACC GGCTGCCCGG TGGTGTTCGA CGCGACCCAT
TCGGTCCAGC TTCCCGGCGG GCTCGGCGCC TCCTCGGGCG GGCAGCGCGA ATATGTGCCG
GTGCTCGCGC GCGGCGCGGT CGCGGTCGGC ATCGCCGGCC TGTTCATGGA GACCCATCCC
GATCCGGCCA GCGCCATGTC GGACGGCCCC AACGCCTGGC CGCTCGACCG GCTCGAACCG
CTGCTCGCCG AGCTCCAGGC GCTCGACGCC CACGGCATCG AGGCGCGCCG GCGCTGGCCC
GACCAGGCCT AG
|
|---|
| Protein sequence | MEILGHEVGL DEPLFVIAGP CVIESEALVL SVAERLRAIA DRLGLFAIFK SSFDKANRSS
GASFRGPGLD DGLRILEKVR AETGLPVLTD VHDVDQVRAA AQVVDVLQTP AFLARQTDLI
EAVGASGRVA NIKKAQFMAP HDMAHVVAKA QGAARAAGVE TPVLVTERGT SFGYNNLVTD
LRGLAIMRDT GCPVVFDATH SVQLPGGLGA SSGGQREYVP VLARGAVAVG IAGLFMETHP
DPASAMSDGP NAWPLDRLEP LLAELQALDA HGIEARRRWP DQA
|
|---|
| |