Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3406 |
Symbol | |
ID | 5197827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3737106 |
End bp | 3739274 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640582953 |
Product | TonB-dependent receptor |
Protein accession | YP_001263890 |
Protein GI | 148556308 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0595288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCGGA AGTTCAGCTT GATGTGCGCG ACGGCGCTGA CGATGGCGGC CGCCACGGGT GCGCAGGCGC AGGTGTCTGC GCCGAACGCC GCCGCGGATG CCGGCAGCGG CGGCCTGGAA GATATTGTCG TCATTGCCCA GAAGCGGTCC GAAAATCTTC AGAACGTCCC TATCGCGGTT TCAGCGGTAA CCGGTGCCGA TCTCCAGACC CGGCGCGTCA CGGATGTGCT CGACCTCAGA CTGGCGGTGC CCAGCCTCAA CATCACCAAC AGCAACGGCA ATGTCAGCAC CAATCTGCGC GGACTTGGCA GCACGGCCGT CAATGCGGGC TATGAAAACA CCACCGCCTT CTATGTCGAC GGTGTTTATC TCGCCTCGCA GCAGGCGACG TTCCTCGGGC TCAGCAATGT GGCGCAGATC GAGGTGTTGA AGGGCCCCCA GGGAACCCTG TTCGGGCGCA ATGCGACAGC TGGCCTGATC CAGATAACGA CACGGACTCC GGGCGATACG CCTACCGTCG AAGGGCGGCT GTCCTACGGC AATTACGGCA CGATCGAGGG CGCCTTCTAT GCCGCGACGC CGGTTGCGAC GGGTGTCGCC GCCGACATCT CCTTTTACGG GACGCATATG GCCGACGGCT GGGGGCGCAA TCGCACCCGC AATGTCGATT CCTATGTGGT CGATCATAAT ATCATGGTGC GATCGAAATG GGTTTTCGAT CCTACCGAAG GCACCAAGGT GACGCTGATC GGCGACTATA GCGACAGCAG CGACACCGCG ACGTCGAAGG CGGCGCTGCG CGGCACCGTC AATCCCTTCT ACCGAAGCGA GGGCCCGGCG CCCGACCTTG GCTATGACAC GGTCAACAAT TCCCCCGATG TCCGGAGCGG CTGGTCGGCA GGCGGCAGCC TCAAGGTCGA GCAGGAGATC GCATCACTGA CGCTGATGAG CCTCACCGCT TATCGCAAGT CGCGCTATGC GATCGGGTTC GACTATGACC AGGGACCGAG CAATCTTGCC GAAGTCACGT TCGTTCAGCC GGATCGGCAA TTCTCGCAGG AACTGCAGCT GCAATCCGGC ACGGGCGGCC CGCTGACCTG GACGGTCGGC GCTTATTATT TCAACGCAAA ATCAGCTTAT GACCCGTTTC ATCTCAATCT TTATGCCGCT GGCAGCCTCA TCACCATTTC CAACCATCAG AAAACCGAAT CGATCGCTGG ATTTGCGCAA GCCACCTATG AAGTGGCACA CGATACCAAC CTGACGCTCG GCGGACGCTA CACCTGGGAA AAGCGTACCG CCTATGACGG GACCACGTCC GTCTTCCTGA TCGGACCGGG CACGACCTTG CCGACCGTCG CGGCGCCGGA CCGCAAGGCG GATTTCAACA AGTTCACCTT CCGCGTCTCG CTCGACCATC GCTTCTCGCA GCAACTGCTC GGCTATGCCT CGTTCAACCG AGGCTTCAAG AGCGGGGGGT TCAATACAGG GACGCCGAAC AGCGCGCCCT ATCTGCCGGA ATCGATCGAT GCCTATGAAA TCGGCTTCAA ATCCGATCTG GCCGATCGCC ATCTGCGTAT CAACGCCGCT GCTTATTATT ATGACTATAC CAATATTCAG GCGCAACGCC TGGCCTCGGG CGTGATCCAG ATCGTCAATG CCGCGTCGGC GAGAATCTAT GGCGTCGATG TCGATTTCGA GGCCTTGTTG ACCCACGGCT TCACCCTCTC CGGCGGGTTC AACCTCGGCA GCTCCAAATT CAAATCCTAT CCCGGCGCCC TGATCGGCAA CATCGATGGC CTGCCGTCGG TCGTCGGCGA TGCGGACGGC AATTACCTGC CCAATGCATC GAAGCTCACC TTCAACCTGG CCGCCAACTA TGCGGTGGAT TTCCGGGGCG GAAAGATCAA CCTCAACGCC AATCTCTATT ATAATGACGG CTATTATCTG GAAGCCGACA ACAAGACGCG CCAGCATGGC TATGCGCAGC TCGGTGCCGC CATCAACTGG ACCAGCCCCG ACGATCATTT CACCGTCGGC CTGTTCGGCA AGAACCTGAC GGACCGACGC GTGCTCAACT ATTCGTCGAC CGTCGCCAGC AACGGCATGC ATGTGGGGCT GTACGGACCG CCGCGAACCT ACGGCGTCAA CGCCGGGTTC AAATTCTAG
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Protein sequence | MARKFSLMCA TALTMAAATG AQAQVSAPNA AADAGSGGLE DIVVIAQKRS ENLQNVPIAV SAVTGADLQT RRVTDVLDLR LAVPSLNITN SNGNVSTNLR GLGSTAVNAG YENTTAFYVD GVYLASQQAT FLGLSNVAQI EVLKGPQGTL FGRNATAGLI QITTRTPGDT PTVEGRLSYG NYGTIEGAFY AATPVATGVA ADISFYGTHM ADGWGRNRTR NVDSYVVDHN IMVRSKWVFD PTEGTKVTLI GDYSDSSDTA TSKAALRGTV NPFYRSEGPA PDLGYDTVNN SPDVRSGWSA GGSLKVEQEI ASLTLMSLTA YRKSRYAIGF DYDQGPSNLA EVTFVQPDRQ FSQELQLQSG TGGPLTWTVG AYYFNAKSAY DPFHLNLYAA GSLITISNHQ KTESIAGFAQ ATYEVAHDTN LTLGGRYTWE KRTAYDGTTS VFLIGPGTTL PTVAAPDRKA DFNKFTFRVS LDHRFSQQLL GYASFNRGFK SGGFNTGTPN SAPYLPESID AYEIGFKSDL ADRHLRINAA AYYYDYTNIQ AQRLASGVIQ IVNAASARIY GVDVDFEALL THGFTLSGGF NLGSSKFKSY PGALIGNIDG LPSVVGDADG NYLPNASKLT FNLAANYAVD FRGGKINLNA NLYYNDGYYL EADNKTRQHG YAQLGAAINW TSPDDHFTVG LFGKNLTDRR VLNYSSTVAS NGMHVGLYGP PRTYGVNAGF KF
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