| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3395 |
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| Symbol | |
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| ID | 5201009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3724212 |
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| End bp | 3726353 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640582942 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001263879 |
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| Protein GI | 148556297 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000531057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0390865 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGATGC GGCTTCGACT GTTTAAAATG CTGGCACTGG CGAACGTCGC CGCGTTGCCG
ATGCAGGCCT GGGCTGCGAG CGAGTCCGCG GACGCGGCGG CTTCGCCAAC AGGATCGGGC
GGTGCCGTGC TCGAGGATAT CGTCGTCACC GCACAGAAGC GTGCGCAGTC GATCGAGCGT
GTCCCGGCCT CGATCCAGGT CATCAGTGGC GGCGATATCG CCGCTTACCA GACGTCCAGC
CTGAAGGCCG TCGCCGCCCG CATGCCCAAC GTCGTGCTCA CCGCCTCACC CAGCGGTGCG
GTGCAAGCCA ATATTCGCGG CTTCGGCACC AGCACCGCCA ACAGCGGCTT CGAGCAATCG
GTCGGGCTCT ATGTTGACGG CGTCTATTCG CCGCGTCCCC ATTCCTACAC GGGCGCCGTG
TTCGATATCG ACCGGGTCGA AGTGGTGAAG GGCACGCAGG GAACGCTGTT CGGCAAAAAC
GCCTCGGTTG GTGCAATGAG CCTCGTCACG CGCAAGCCGG GCAGGGCGTT CGGCGGCTAC
CTGGATGGCA GCTACGAATT CCGGCTTGAC GAGACCCGGC TCGAGGGCGC GATGGACGTG
CCGATCGGCG AACGCTTCCG CACACGTATC GCCGGCGTCT ATGGTGACCA GAGCAAGGGC
TGGGTCCGCA ATTTGGCGAA CGGCAAGCAG GAACCGACAT CGACCGAATA TGCAGGTCGC
ATCCGCGCCG AATGGGACGC GACTGACACA CTGACCTTCA ACGCAAAAGG CGAGTTCAGC
CGTTACAAGC GCATCGGCGA TCCTTTCGTG GGCGTCGGCG GCACGGTGTT CAACGGCATC
GAGGTCGAGG ATGCGATCAA GAACGTCTCG TCCAACCTTA TCCCGGGCGA TGGCGGCCAG
GCCAGCAACC GACGGCGCAG CAATGTCGCC ACCGCAGGCT TCGACTGGAA ACTGGGCAAT
CACACCGTCA CCGCCATCAC CTCGTGGCAG AAGCTGCGCT ACGACGCCTT TGTCGATCTC
GACGAGAGCG CGGGCCCCGT CGACTATGTC GTCAATTTCT ACGAGCGTTT CCGTCAGTTC
ACCCAGGAAT TGAGGATCGC GTCGGACGAC AGCGGTGCGT TCAGCTATGT CGCGGGCCTC
TTCTATCTTA ACCAGACGCT GAAATTCGGG ACAGACACGA TTTTCATTCC GGCTCCGTCG
CAGCAATTGC TGACGGTCGA TGCCCGCGCC TATTCGGCGT TCGCACAAGG GACTTTCAAG
GCAACCGACC GCCTGACCTT CACCGCCGGC CTGCGCTACA CGCGTGACGA AAAGGAAGGC
AGGCTCGATA TCGCCAAGGG CAATCAGAGC GCCGTCACGC GCACCAAGGC GAATGACGAC
AGCTTCGACT GGTCGTTCGT CGGCGAATAT GAGGTGATCG ACGGCACCCG GCTCTATGGC
TCGGTTTCGC GCGGTCACAA GGGCCAGGGG TTCGCCAATT CGGTTCCGGG CACCGCGCTG
GTTCCGGCCC GCCCCGTCTT CGACGGGGAG AAGGCGACCA ACTATGAAAT CGGCATCAAG
TCGCGGTTTC TCGGCGGGCG CGCGCGCGGC AACCTTGCCA TCTACCAGCT TGACGTGAAC
GGCTTCCAGG CCTCGCAATT CGATCCGGCG ACGCGCTTGT TCATCGTCCA GAATGTCGAC
GCGCGCAGCC GTGGCGTCGA GGCCGAATTG CAATTGCTGG CAGCCGAAGA TCTGCAGATC
AATTTTTCCG GCGCCTATAA CGATGCCAAT ATCCGTGCGA CCGGGAAACA GCTTGTCAGC
GCGCCACGCT GGAACATGAC GGCCGGGTTC GACTATACGC CACAACTAAC CGACAATATT
GAACTTCAGG CCGGCGCGCA GTTCAATTAT GTTACAAAAT ATCCGCATCA GTTCGATCTG
CTACCTGGCA ATTTCACGCC CGGCCATAGC AATCTCGATG CGCGGATCGG CGTGAAATTG
TCGCCGTCGG ACATTGTCAT CGCGGTCATC GCCAAGAATC TGACCAACGA GCAATATGCC
GACTTTGCCT ATGGCTATGC CTTCGACGCG CCCGGCACCG CCTTTACCCA GCAATTGAAC
CGTCCGCGTA CCATCGCCTT GTCGGTTCAT CTGCCTTTCT GA
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| Protein sequence | MGMRLRLFKM LALANVAALP MQAWAASESA DAAASPTGSG GAVLEDIVVT AQKRAQSIER
VPASIQVISG GDIAAYQTSS LKAVAARMPN VVLTASPSGA VQANIRGFGT STANSGFEQS
VGLYVDGVYS PRPHSYTGAV FDIDRVEVVK GTQGTLFGKN ASVGAMSLVT RKPGRAFGGY
LDGSYEFRLD ETRLEGAMDV PIGERFRTRI AGVYGDQSKG WVRNLANGKQ EPTSTEYAGR
IRAEWDATDT LTFNAKGEFS RYKRIGDPFV GVGGTVFNGI EVEDAIKNVS SNLIPGDGGQ
ASNRRRSNVA TAGFDWKLGN HTVTAITSWQ KLRYDAFVDL DESAGPVDYV VNFYERFRQF
TQELRIASDD SGAFSYVAGL FYLNQTLKFG TDTIFIPAPS QQLLTVDARA YSAFAQGTFK
ATDRLTFTAG LRYTRDEKEG RLDIAKGNQS AVTRTKANDD SFDWSFVGEY EVIDGTRLYG
SVSRGHKGQG FANSVPGTAL VPARPVFDGE KATNYEIGIK SRFLGGRARG NLAIYQLDVN
GFQASQFDPA TRLFIVQNVD ARSRGVEAEL QLLAAEDLQI NFSGAYNDAN IRATGKQLVS
APRWNMTAGF DYTPQLTDNI ELQAGAQFNY VTKYPHQFDL LPGNFTPGHS NLDARIGVKL
SPSDIVIAVI AKNLTNEQYA DFAYGYAFDA PGTAFTQQLN RPRTIALSVH LPF
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