| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3390 |
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| Symbol | |
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| ID | 5196539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3717388 |
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| End bp | 3718893 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640582937 |
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| Product | integrase catalytic subunit |
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| Protein accession | YP_001263874 |
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| Protein GI | 148556292 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4584] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0417622 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAGACAG TGGTTCGGAT TCGGCGCGAG TATGCCGGCG GCAAGGCGAT CAAGGCGATC
GCGCGGGATT TGCATGTGTC GCGGAAGGTG ATCCGCAAGG CGATCCGGGC GCCGGAAGGC
GCATTCGACT ATCAGCGCAA GGTTCAGCCA CTGCCTAGGA TCGGGCCGTT TCAGGATCGC
CTGAACACAC TGCTGGAAGA GAACGAGGTG CGCGGCAGGC GCGAGCGACT GCGGATGACG
CGGATACATG ATCTGCTGGA GCGCGAAGGT TTTGAGGGTT CCTACGATGC CGTTCGGCGC
TACGCGGCGC GCTGGAAGGC CGACCGGCGC AAGGATGCCG GCGATGGTGT CACCGCCTTC
ATCCCGCTGA TGTTCAAGCC GGGCGAGGCC TACCAGTTCG ACTGGAGCCA TGAGGATGTG
GAGATCGCCG GCAAGCCGAT GCGCGTGAAG GTTGCGCATA TGCGGCTGTG TGCATCGCGG
GCGGTCTATG TCCGGGCCTA TCCGCGCGAG AGTCAGGAGA TGCTGTTCGA CGCGCATGCG
CGCGGCTTTG CTTTCTTCGG CGGCGTGCCG GGCCGCGGCA TCTACGATAA TATGAAGACG
GCGGTGACGA GCGTGTTCAC GGGGAAGGAG CGGGTCTTCA ACCGGCGGTT CCTGATCATG
ACCGACCATT ATATGGTCGA GCCCACCGCC TGCTCGCCGG CGGCGGGATG GGAGAAGGGC
CAGGTCGAGA ACCAGGTGCA GACGATCCGG GGCCGCTTCT TCCAACCCCG GTTGCGGTTC
GCCAGCCTCG ACGAGCTCAA TGGCTGGCTG GAGGCCGAGT GCCAGCGCTG GGCGGAACGA
CAGGCACACC CGGAACAGGG CGAGCTGACC GTGGCGCAGG CGCTGGAGAT CGAGCGATCG
GCACTGCAGC CGATGCTGGG ACCGTTCGAC GGCTTTAACG AGAGCGAGCA TGCGGTGACG
GGCACCTGCC TGATCAGCTT CGATCGCAAC CGCTACTCGG TTCTCTCGAC GGTGGCGCGG
CGGACGGTGC AGGTCCGGGC CTATGCCGAC CGCATTGTCG TGCGCTGCGG CGAGGAGGTT
GTCGCCGAGC ATCCCCGCTA CTTCGGGCGC AACCGCACGA TCTATGACCC CTGGCATTAT
CTGCCGGTAC TGGCCCGCAA GCCCGGAGCG CTGCGGAACG GCGCGCCCTT CCAGGACTGG
GATCTGCCGC CGGCGCTGGC GCGCCTGCGC CGCAAGCTTG GCAATGGCGA CGATGCCGAC
CGCCGGTTCG TCCGTGTGCT GTCGGCCGTG CTGACCGATG GTCTGGAGCC GGTCGAAGCG
GCCGTCCGCG AGGCATTGGC GACCGGCACG GCGAGCGACG ACCTGATCCT CAACATCCTG
GCGCGGCGCC GCGAACCGCC GCGACCGCTC ACCATCATCA CCTCCGAAGA CAGCGCCTTG
CGCCATCCGC CGATCGCCGA CTGCGCCCGT TACGACCAGC TGAGGACCTT CGATGCAGCG
GCATGA
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| Protein sequence | METVVRIRRE YAGGKAIKAI ARDLHVSRKV IRKAIRAPEG AFDYQRKVQP LPRIGPFQDR
LNTLLEENEV RGRRERLRMT RIHDLLEREG FEGSYDAVRR YAARWKADRR KDAGDGVTAF
IPLMFKPGEA YQFDWSHEDV EIAGKPMRVK VAHMRLCASR AVYVRAYPRE SQEMLFDAHA
RGFAFFGGVP GRGIYDNMKT AVTSVFTGKE RVFNRRFLIM TDHYMVEPTA CSPAAGWEKG
QVENQVQTIR GRFFQPRLRF ASLDELNGWL EAECQRWAER QAHPEQGELT VAQALEIERS
ALQPMLGPFD GFNESEHAVT GTCLISFDRN RYSVLSTVAR RTVQVRAYAD RIVVRCGEEV
VAEHPRYFGR NRTIYDPWHY LPVLARKPGA LRNGAPFQDW DLPPALARLR RKLGNGDDAD
RRFVRVLSAV LTDGLEPVEA AVREALATGT ASDDLILNIL ARRREPPRPL TIITSEDSAL
RHPPIADCAR YDQLRTFDAA A
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