Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3376 |
Symbol | groEL |
ID | 5198845 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3704215 |
End bp | 3705864 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640582922 |
Product | chaperonin GroEL |
Protein accession | YP_001263860 |
Protein GI | 148556278 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
TIGRFAM ID | [TIGR02348] chaperonin GroL |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0621223 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCGA AAGACGTCAA GTTTTCGCGC GACGCCCGTG AGCGCATCCT GCGCGGCGTC GACATCCTCG CCGACGCGGT GAAGGTCACG CTGGGCCCGA AGGGCCGCAA CGTCGTCATC GACAAGTCGT TCGGCGCCCC GCGCATCACC AAGGACGGCG TCACCGTCGC CAAGGAAATC GAGCTGAAGG ACAAGTTCGA GAACATCGGC GCGCAGCTCG TCCGCGAAGT CGCCTCGAAG ACCAACGACC TGGCCGGCGA CGGCACCACC ACCGCCACCG TGCTCGCCCA GGCGATCGTC CGCGAGGGCC TGAAGTCGGT CGCGGCCGGC ATGAACCCGA TGGACCTGAA GCGCGGCATC GACCTCGCCG TCACCAAGGT CGTCGAGAAC CTCAAGGCCC GCTCGAAGCC GGTCGCCGGC TCGAACGAAG TCGCCCAGGT CGGCATCATC TCGGCCAATG GCGACAAGGA AGTCGGCGAG AAGATCGCGG AAGCGATGGA CAAGGTCGGC AAGGAAGGCG TGATCACCGT CGAGGAGGCC AAGGGCCTCG AGTTCGAGCT CGACGTCGTC GAGGGCATGC AGTTCGACCG CGGCTACCTC TCGCCCTACT TCATCACCAA CCCGGAGAAG ATGCAGGTCG AGCTGACCGA CCCGTACATC CTCATCCATG AGAAGAAGCT GTCGAACCTG CAGTCGATCC TGCCGATCCT CGAGGCGGTC GTGCAGTCGG GCCGTCCGCT GTTGATCATC GCCGAGGACA TCGAGGGCGA GGCGCTGGCC ACCCTGGTCG TCAACAAGCT GCGCGGCGGC CTGAAGGTCG CGGCCGTCAA GGCGCCGGGC TTCGGCGATC GCCGCAAGGC GATGCTCGAG GACATCGCGA TCCTGACCAA CGGCGAGCTG ATCTCCGAGG ATCTCGGCAT CAAGCTCGAG AACGTCACCA TCGGCATGCT CGGCACCGCC AAGCGCGTCA CGATCGACAA GGACAACACC ACCATCGTCG ATGGCGCCGG TGCGGCCGAT GCGATCAAGG GCCGCGTCGA GGCGATCCGC AAGCAGATCG AGATCACCAC GTCCGACTAT GACCGCGAGA AGCTCCAGGA GCGCCTGGCC AAGCTCGCCG GCGGCGTCGC CGTCATCAAG GTCGGCGGTG CGACCGAGGT CGAAGTGAAG GAGCGCAAGG ACCGCGTCGA CGACGCGCTG CACGCGACCC GCGCGGCCGT CGAGGAAGGC ATCGTCCCCG GTGGCGGCAC CGCCCTCCTC TATGCGACCA AGGCGCTCGA CGGCCTCAAG GGCGCGAACG ACGACCAGAC CCGCGGCATC GACATCATCC GTCGCGCCAT CTCGGCTCCG GTCAAGCAGA TCGCCCAGAA CGCCGGCCAG GACGGCGCGG TCGTCGCCGG CAACCTGCTG CGCGAGAATG ACGAGACCAA GGGCTTCAAC GCCGCGACCG ACGTCTATGA GAACCTCGTC GCCGCCGGCG TGATCGACCC GACCAAGGTC GTCCGCACCG CGCTGCAGGA CGCGGCCTCG GTCGCCGGCC TGCTCATCAC CACCGAGGCG ACGATCGCCG AGCTGCCCGA GGACAAGGCC CCGGCCATGC CCGGCGGCGG CATGGGTGGC ATGGGCGGCA TGGGCGGCAT GGACTTCTAA
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Protein sequence | MAAKDVKFSR DARERILRGV DILADAVKVT LGPKGRNVVI DKSFGAPRIT KDGVTVAKEI ELKDKFENIG AQLVREVASK TNDLAGDGTT TATVLAQAIV REGLKSVAAG MNPMDLKRGI DLAVTKVVEN LKARSKPVAG SNEVAQVGII SANGDKEVGE KIAEAMDKVG KEGVITVEEA KGLEFELDVV EGMQFDRGYL SPYFITNPEK MQVELTDPYI LIHEKKLSNL QSILPILEAV VQSGRPLLII AEDIEGEALA TLVVNKLRGG LKVAAVKAPG FGDRRKAMLE DIAILTNGEL ISEDLGIKLE NVTIGMLGTA KRVTIDKDNT TIVDGAGAAD AIKGRVEAIR KQIEITTSDY DREKLQERLA KLAGGVAVIK VGGATEVEVK ERKDRVDDAL HATRAAVEEG IVPGGGTALL YATKALDGLK GANDDQTRGI DIIRRAISAP VKQIAQNAGQ DGAVVAGNLL RENDETKGFN AATDVYENLV AAGVIDPTKV VRTALQDAAS VAGLLITTEA TIAELPEDKA PAMPGGGMGG MGGMGGMDF
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