Gene Swit_3366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3366 
Symbol 
ID5196395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand+ 
Start bp3694004 
End bp3694669 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content74% 
IMG OID640582912 
Productregulatory protein, TetR 
Protein accessionYP_001263850 
Protein GI148556268 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.402677 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.315376 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGCCG ATCCATATCC CAGTCCCGCC CGCCAGGCCG GCCGCCCGCG CCGCCTGACC 
CTCGACCGTC TGCTCGACAC CGCGATCGAG CTGGGCCTCG CCGATCTCAA CATGAAGGAA 
CTTGCCGCGC ATCTCGGCGT CGGGATCGCC ACCCTCTATC GCTATGTCGA GAATCGCGAC 
GCGCTGATCC GGCTTGCCGC CGGCCGCCAG GCGACCCGCT CGGCGCCGGT CGACAGCGGG 
CAGCCCTGGC GGGAGATCGT GCTCGACTAT GCCGCCGCCC TGTTCAGCTC GGTCGGGCAG 
CAGCCCTCGC TGATCATCGA GTTCGTCGAG GCGCGCTGGG GCATCGCGGT CGAGCTGGAG 
TTCGTCGACG GCTTCCTCGG CGCGCTGGAG CGGCGCGGCT TCGCGCCCGG CGAGGCGATG 
GCGCTCTACC GCGCGATGGC GAAGATCGTG CTCGGGGCGG CCGTGGCGGC GGGCCATTTC 
GCCGCGCTCG CGGCGCGCGG CACGACCCAG GCGCGCGAGC TGCGGCAGGC GCTCGGCAGC 
TTCGAGGCCG ACGAGCTTCC GCACCTGCGC GCCGCCGCCG ACGACTATGC CGACGAGGTC 
GCGGCCACCG CCTGGCGCCC GATCCTCGAC GCGGTGCTCG ACGCGACGGA GGCGCGGCGC 
GGCTGA
 
Protein sequence
MNADPYPSPA RQAGRPRRLT LDRLLDTAIE LGLADLNMKE LAAHLGVGIA TLYRYVENRD 
ALIRLAAGRQ ATRSAPVDSG QPWREIVLDY AAALFSSVGQ QPSLIIEFVE ARWGIAVELE 
FVDGFLGALE RRGFAPGEAM ALYRAMAKIV LGAAVAAGHF AALAARGTTQ ARELRQALGS 
FEADELPHLR AAADDYADEV AATAWRPILD AVLDATEARR G