| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3314 |
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| Symbol | |
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| ID | 5196323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3644559 |
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| End bp | 3646973 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640582859 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001263798 |
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| Protein GI | 148556216 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000257561 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000438861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCGCATC AAAAAGCTCG GTTTTCCACG CGCGCCGCGG TGATCGCCCT GGCCATCGGC
GGCTGCGCCG CGCAGGCCCA GACGGCGCCC GCCGACGAAG CCCCCCAGGC CTCGGCCGGC
GGCGGCATCG AGGACATCGT CGTCACCGCC CGCCGCCAGT CCGAATCGCT GCAGAAGACG
CCGATCTCGA TCACCGCGCT CGACAGCCGC GCGCTCGAGC GGAACAACAT CCAGGCGGTC
GACAAGATCG GCCAGATCGC GCCGAACCTG GTCATCAGCC AGCAATCCTC GGCGCTGTCG
GCGGCATCGA TCAACATCCG CGGCATCGGC CAGACCGATC CCTCGCTCGG CCTCGACACC
GCGGTCGGCA TCTATCTCGA CGGCGTCTAT GTGGCGCGCA GCGCGGGCTC GATCTTCGAC
CTGGTCGACA TCGAGCGGAT CGAGGTGCTG CGCGGCCCGC AGGGCACGCT GTTCGGCCGC
AACACGACGG GCGGCGCGAT CCAGATCGTC TCGAAGAAGC CGGCCGACAG CTTCGGCGTC
ACCGCCAAGG GCGGCTATGG CAGCCGCGAC AACATGTTCG GGCGCCTGCG CGTCGACACC
GGCGAGTTCG GCGATTCGGG CATCTCGGCG TCGGGCAGCT ATTATCACCG GCAGCGCGAC
GGCTATTTCA ACAACCTGCT GACCCCCAGC AGCAAGGACC CCGGCTCGCT CAACGTCGAC
GCCTTCTCGG TCGCGCTGGA CGGCGATTTC GGGCCGTTCA AGGCGAGCTA CGGCTTCGAC
TATGACGACC GCGTCGGCGC GCCCGGCTTC TTCCAGACGG TCGCACTCAG CCCCGCCGCC
CAGGCCTATT ACAGCCGCTC GCCGCAATAT GGCGGCCCGG CGCTGCAGTT CGTCGGCGCC
GACACGCGCC TCAAGAGCGG CCTGCAACAG CCCGGCGGCC CCGGCAACAC CTACACCTCG
CACAGCCGCA GCCAGGGCCA CAACCTGACC CTGTCCTACG AGGTTTCGCC GGCCCTCACG
CTCAAGTCGA TCACCGGCTA CCGCAAGCTG CTGCTCGAGA ACGTCCTGGG GCTCAGCGGC
CAGGGCGACC TCAAGGGCCT CGTCCTCGAC TTCACCTCGC CGACCCTGAC CTCGGTCCAG
TCGGTGACGC CGTACAACGG CTACAACAGC CCGCAGAAGC AGAAGCAGTG GTCGCAGGAA
CTCCAGCTCC TCGGCAAGGC CGGCGACTTC AGCTACGTCC TCGGCGGCTA TTATTTCCGC
GAGAAGGTGT CGGAGCGGAA CAACCAGAAC CTGACCCTGG TCCTCGCGCC CGCCGCCCTG
CCCTTCCTCG GCTTCCCCGG CGCGGTCGCC GATGCGCTGA CCGCGCAGGG GATCGACCTG
ATCGGCTTCA ACACCAGCCC GGTCGCGGCC TATTCGCAGA CCTCGAAGTC CTATGCCGCC
TTCGGCCAGG TGAGCTGGAA GCCGCAGGCG CTCGACGAGA AGCTCGAAGT GACCGGCGGC
ATCCGCTACA CCGAGGACCG CAAGAACATC TTCCTGCAGA ACAGCAATGG CGGCGTGTCG
ACGATCGTCG GCCCGGCGCG CGGCAGCACC AAGAACACCA ACACGTCCTT CCTCGGCTCG
GTCAGCTACC AGATCGACCC GGACGCGCTG GTCTATGCCA AGGTCTCGAC CGGCTACAAG
TCGGGCGGCT TCAACCCGCG CGCCGACACG CTGAACAGCT TCGCCCCGGA GAAGCTGGTG
TCCTACGAAG CCGGCGCCAA GCTCGACCTG CTCGACCGCC ATCTGCGCAT CAACGCGGCG
GCGTTCCTGA GCAAATATGA CGACCTGCAG GTGCCGCAGT TCGCGGCCGG CAGCGGCGGC
GCGTCGACCC TGCTGGTCAA CGCCGGCAAG GCCGAGTTCA AGGGCTTCGA GCTGGAGGTC
ACCGCCATCC CGGCGCGCGG CCTGACCCTG TCGGGATCGC TCGGCTACAC CGATCCGAAG
TACAAGCGCT TCCTGTTCCT GAACCCGAAC ACCAACACGA TCAGCGACAT CGCCGCCACG
GCGCGCTTCC CGAACGTCGC CAAGTTCAAT TCGAACCTGG CGGTCGACTA CACCTTCGAA
CCGATGGACG TCGGCACGCT GTCGGCGCGG GTCTCCTACG CCTATCGCAG CCATGTCTAT
TTCTACCCGA ACGACGCGGT GAACCCCTAT CAGCATCAGG TCGACTCGCC CGCGACCAAC
ACGGTCGACG CGCGCATCGC CCTCAGCGAC ATCGCGCTCG GCGCCCGCGC CAAGGGCGAG
ATCGCGCTGG TCGGCGAGAA TCTGCTCAAC GAGGACCAGG TGCTCTACGG CATCGACTTC
GGCTCGCTCG GCTTCGGCGG CAAATTCTAC GCCGAGCCGC GCCGCGTGTC GGTCGAGTTC
AAGATCAGCT TCTGA
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| Protein sequence | MSHQKARFST RAAVIALAIG GCAAQAQTAP ADEAPQASAG GGIEDIVVTA RRQSESLQKT
PISITALDSR ALERNNIQAV DKIGQIAPNL VISQQSSALS AASINIRGIG QTDPSLGLDT
AVGIYLDGVY VARSAGSIFD LVDIERIEVL RGPQGTLFGR NTTGGAIQIV SKKPADSFGV
TAKGGYGSRD NMFGRLRVDT GEFGDSGISA SGSYYHRQRD GYFNNLLTPS SKDPGSLNVD
AFSVALDGDF GPFKASYGFD YDDRVGAPGF FQTVALSPAA QAYYSRSPQY GGPALQFVGA
DTRLKSGLQQ PGGPGNTYTS HSRSQGHNLT LSYEVSPALT LKSITGYRKL LLENVLGLSG
QGDLKGLVLD FTSPTLTSVQ SVTPYNGYNS PQKQKQWSQE LQLLGKAGDF SYVLGGYYFR
EKVSERNNQN LTLVLAPAAL PFLGFPGAVA DALTAQGIDL IGFNTSPVAA YSQTSKSYAA
FGQVSWKPQA LDEKLEVTGG IRYTEDRKNI FLQNSNGGVS TIVGPARGST KNTNTSFLGS
VSYQIDPDAL VYAKVSTGYK SGGFNPRADT LNSFAPEKLV SYEAGAKLDL LDRHLRINAA
AFLSKYDDLQ VPQFAAGSGG ASTLLVNAGK AEFKGFELEV TAIPARGLTL SGSLGYTDPK
YKRFLFLNPN TNTISDIAAT ARFPNVAKFN SNLAVDYTFE PMDVGTLSAR VSYAYRSHVY
FYPNDAVNPY QHQVDSPATN TVDARIALSD IALGARAKGE IALVGENLLN EDQVLYGIDF
GSLGFGGKFY AEPRRVSVEF KISF
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