Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3312 |
Symbol | |
ID | 5196321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3641267 |
End bp | 3643621 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640582857 |
Product | TonB-dependent receptor |
Protein accession | YP_001263796 |
Protein GI | 148556214 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000345148 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000067501 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGTCG CATTCCAGCT CGCGCGCGCC TCCACCATCG CGCTCGCGAT CGCCACCACC GCCCCATCCT TCGCGCAGGC GACGCCGTCG CAGGCGGCCG TCCCGGCCGC GGCCGAGGAC AATAGCGTCG CCGGCGTCGA GGAGATCGTC GTCACCGCGG AGCGCCGGGC CGAAAACCTG CAGCGCACCC CGATCGCGAT CACCGCGCTG ACCGCCAACA GCCTCCAGTC GTCGGGCATC ACCGACCTGC GCGGCGTGGT GCAGGCGGCG CCCAGCCTCT ATTTCGCGCC CTATCCCAGC TCGACCACCA CGCTGGTCCT GTTCATGCGC GGCCAGGGCA TCGGCGATCC GAACATCATC ACCAAGGACG GCGGCGTCGG CCTCTATGTC GACGGCATCT ACCAGTCGCG CCCGCAGGCG TCGGCCTTCG ACCTCGCCGA CGTCGAGCGG GTCGAGGTGC TGCGCGGTCC GCAGGGCACG CTCTACGGCC GCAACACCAC CGGCGGCGCG GTCAACATCA TCAGCAAGAA GCCGACCGGC GAGCTCGGCG CGCATGGCCT GCTGTCGCTC GGCAACTACG ACTATCGCCG CGCGCTGGTG AACCTCGACC TGCCGCAGTT CGGCACCTTC AAGGTCAAGC TGACCGGCCT CTATTCGAAC CGGGACGGCT GGGCGAACAA CGCCGCCAAC ACCGCGGGCA CGCCCGACGC GCACGATTTC CAGTCCGACC GCAAATATGC GGTGCGCGGC GCGGTCCGCT GGGAACCGAC CGACGGCATC ACCGTCGACT ATTCGGGCGA CTATAGCGAC CAGCGCACCA CGCCGGTCCG CTACGTCACC GAGAACGCCT TCGCGCCCTT CCTCTTCCCC GGCTACACCG CCGACCCGGA GACCGCCTAT CGCCCGGTCT ACCTGCCCTA CAGCCATGTG AAGTCGGACG GCCACACGCT GATCGGCGAA TGGCGGGCGA GCGACGCGCT GACGCTGCGT TCGCTGAGCA GCTACCGGCA CATCAAGGTG CGGACCTACC AGGACTATAC CGAGGCCTTC CTGGCGCCCT TCTTCGCGTT CGACCAGGTC GGCTCGAAGA CCTACACCCA GGAATTCCAG GCGGTCGGCA CCATCGCCGA CCAGTTCAAA TATGTCGTCG GCATCTATTA TTTCCGCGAG AAGGCCAATC ATTTCGAGAC GGTCGACGTC GGCACCGGCA CGCCCGGCCA GCAGGTGCTG GTCGATCGCG ACACCAACGC CAAGTCGACC TCCAAGGCGA TCTTCGGCCA GCTGACCTGG ACCCCGGAGT TCGCCGACGG CAAGTTCGAC GTGACCGTGG GCGGCCGCTA CACCCGCGAC AAGCGGACCG CCGACCGCAT CCGCACCTCG AACTTCTTCA TCGGCCAGAC TTCGCCGCTG GTCGCCCGCC GCTTCAACGG CCCGGGCGCG ACCATCCCGC TGGGATCGGT GGTCGGCGCG ACCGACGTGA AGAACAGCAA GTTCAACCCG GCGCTGACCC TGTCCTACCG CCCGGTCGAG AACGTCTCGC TCTATGCGAA GGTCGTGACC GGCTACAAGG CGGGCGGATC GAACGAGGCG TCGCCGACCT TCACCCGCAC CTTCGGGCCG GAGACGGTCA CCAGCTATGA GGCGGGCATC AAGTCCGACC TGCTCGACCG GCGGCTGCGC GTGAACCTCG CCGGCTTCAT CGCCAAGTAC AAGGACCTGC AGCTCGACAT CTCGGCCGAC CCCGCCGACG CGTCGCTGGC CGACACGTTC AACGTCGGCC GCGCGACGGT GAAGGGGCTG GAGGCCGACC TGACGGCGGT GCCGATCCCC GGCCTGACGC TCAGCGCCAG CTATGCCTAC ACCACCTCGA AGATCCGCAA CGTGCTGGCC CCGGCCGGCT CGATCTTCGA TCCCGCCGTC AACCCCGGCT CGCCGGTGCA GGTCGGCGAC AACATCACCG GCTATTTCGT GCTGCCCTTC ACCCCGAAGA ACAGCGTCCG CCTGTCGGGC GACTGGGTGA TCGGGACGTT CGGCAGCGGC GACCTCGCCG CGCATGTCGA CTATACGTGG AAGGACAAGG TCTACACCAC CGCCGGCGAC GGCCCCAGCG TCCCGCTCGG CCGCGACGCG CCGATCAACA AGGCCTATGG CCTGGTCGAC GCCCGCCTGA GCTACACGAT CGATCGCGGC GGCGGCCGCA ACATCTCGAT CGGGCTGTGG GGCAAGAACG TGCTCGACAA GCGCTATCCC GGCTTCGTGA TCGGCTCGGG CTCGATCATC GCCGGCTACC CGAACCAGGC GATCTCCTAC GGCGATCCGG CGACCTACGG GATCGACGTC GGCTTCTCCT TCTAA
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Protein sequence | MTVAFQLARA STIALAIATT APSFAQATPS QAAVPAAAED NSVAGVEEIV VTAERRAENL QRTPIAITAL TANSLQSSGI TDLRGVVQAA PSLYFAPYPS STTTLVLFMR GQGIGDPNII TKDGGVGLYV DGIYQSRPQA SAFDLADVER VEVLRGPQGT LYGRNTTGGA VNIISKKPTG ELGAHGLLSL GNYDYRRALV NLDLPQFGTF KVKLTGLYSN RDGWANNAAN TAGTPDAHDF QSDRKYAVRG AVRWEPTDGI TVDYSGDYSD QRTTPVRYVT ENAFAPFLFP GYTADPETAY RPVYLPYSHV KSDGHTLIGE WRASDALTLR SLSSYRHIKV RTYQDYTEAF LAPFFAFDQV GSKTYTQEFQ AVGTIADQFK YVVGIYYFRE KANHFETVDV GTGTPGQQVL VDRDTNAKST SKAIFGQLTW TPEFADGKFD VTVGGRYTRD KRTADRIRTS NFFIGQTSPL VARRFNGPGA TIPLGSVVGA TDVKNSKFNP ALTLSYRPVE NVSLYAKVVT GYKAGGSNEA SPTFTRTFGP ETVTSYEAGI KSDLLDRRLR VNLAGFIAKY KDLQLDISAD PADASLADTF NVGRATVKGL EADLTAVPIP GLTLSASYAY TTSKIRNVLA PAGSIFDPAV NPGSPVQVGD NITGYFVLPF TPKNSVRLSG DWVIGTFGSG DLAAHVDYTW KDKVYTTAGD GPSVPLGRDA PINKAYGLVD ARLSYTIDRG GGRNISIGLW GKNVLDKRYP GFVIGSGSII AGYPNQAISY GDPATYGIDV GFSF
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