| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3274 |
|---|
| Symbol | |
|---|
| ID | 5197111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3604691 |
|---|
| End bp | 3605890 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640582819 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001263758 |
|---|
| Protein GI | 148556176 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.220833 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGGC GTTCGGCACA GGCGGCGCAT AACCGCAAGG GGCCGAGCGT GTTCGAAAGC
CTGTCGCCAT CCTCGCTACC GGCCGCCGAC GAGGCGCTCC GGGAGCCGAT CCGTCGCCTG
ATCGCCGATG CCATGGGGCC GACGCCGCTC GATCGCCGGG CGCGGTCCTG GCAGGGTTTC
GACGCGGCGT TCAGCCGCGC GCTCGGGCAG GCCGGCTTCC TCGGCCTGAC TTTGCCGGAG
CGTTATGGCG GCGGCGGGCG CGGGCCGTTC GCGCGCTTCG TGATCGTCGA GGAGCTGCTG
TCGGCGGGCG CCCCCGTCGC CGCGCACTGG ATCGCCGACC GGCAGAGCGC GCCGCTGATC
CTCGGCTATG GCAGCGAGGC GCAGCGCCGC TTCTACCTGC CGCGCATCTG CCGGGGCGAG
GCCTTCTTCT GCATCGGCAT GAGCGAGCCG GGATCGGGAT CGGACCTCGC CAGCGTCCGC
ACCCGCGCCG AGCGGACCGG AAAGGGCTGG CGGCTCGGCG GCCAGAAGAT CTGGACCACC
AACGCCCAGC ACAGCGATTA CATGATCGCG CTGGTGCGGA CCTCGGGCGC GGCGGCCGAC
CGCCAGGCGG GCCTGTCGCA GCTCATCGTC GATCTCCGCG CGCCGGGCGT CGCCGTCCGG
CCGATCGTCG ACCTGACCGG CGATGCCCAT TTCGCCGAGG TGTTCTTCGA CGATGTCGAG
CTGGCCGACG ATGCGCTGAT CGGGACCGAA GGCGAGGGCT GGAAGCAGGT GACCGCCGAA
CTGGCCTTCG AGCGGTCGGG GCCCGAGCGA ATCTATTCGA GCATCGTGCT GGTCGACGCC
TGGATCGCCC ATGTCGCCCG TGCCGGCCGG CGCGACGCCG CGACCCTCGC ATTGGCCGGC
CGGATGACCG CCGAGATCGC GACGCTGCGG GCGATGTCGC TGGCGGTGAC CGCGCTGCTG
GCGCAGGGGC TGAGCCCGGT GGTGGAGGCG TCGCTGGTCA AGGACCTCGG CACCGGCTTC
GAGCAGGCGG TGCCGCGATG GATCGGCGAC GATCTCGCCG CCCATCCCGA CGAGGCGGTC
GCGCCCGAGC TTCACCGCAC CGTCGCCTAT CTCAGCCAGA TCGCGCCGAG CTTCTCGCTG
CGCGGCGGCA CCCGCGAAAT CCTGCGCGGC ATCATCGCGC GCGGCCTGGG ACTACGCTGA
|
|---|
| Protein sequence | MAGRSAQAAH NRKGPSVFES LSPSSLPAAD EALREPIRRL IADAMGPTPL DRRARSWQGF
DAAFSRALGQ AGFLGLTLPE RYGGGGRGPF ARFVIVEELL SAGAPVAAHW IADRQSAPLI
LGYGSEAQRR FYLPRICRGE AFFCIGMSEP GSGSDLASVR TRAERTGKGW RLGGQKIWTT
NAQHSDYMIA LVRTSGAAAD RQAGLSQLIV DLRAPGVAVR PIVDLTGDAH FAEVFFDDVE
LADDALIGTE GEGWKQVTAE LAFERSGPER IYSSIVLVDA WIAHVARAGR RDAATLALAG
RMTAEIATLR AMSLAVTALL AQGLSPVVEA SLVKDLGTGF EQAVPRWIGD DLAAHPDEAV
APELHRTVAY LSQIAPSFSL RGGTREILRG IIARGLGLR
|
|---|
| |