Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3246 |
Symbol | |
ID | 5196530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3574621 |
End bp | 3576315 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640582791 |
Product | amidohydrolase 3 |
Protein accession | YP_001263730 |
Protein GI | 148556148 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00403694 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGGGTG TGGCAGCCAG GGCGACGGCG CTCGGGGCGA TGCTCCTGGC CGGCGCGGCG ATGGCCGAGG CGCCGGCCGA CACGATCCTG CTCAACGGGC AGGTCTACAC CCCCGGCGGC TGGGCCGAGG CGCTGGCGAT CCGCGACGGC GTGATCGTCG CGGTCGGCGA CGCCAAGGCG GCGGAGGCCT GGCGCGGCGC GGCGTCGAAG GTCGTCGACC TGAAGGGCGC GGCGGTGTTC CCCGGCCTCC ACGACATGCA CGTCCACACC CAGTTCGCCG GGCTCGAACA GTTCGCCTGC GGCTTTCCCA ACGCCGCCAA GCCGGCGGTG ATCGCGGCCC GGATCAAGCA ATGCGCGGCA AAGGCCGAGC CGGGCGCCTG GATCGTCGGC GGCAACTGGT CGGCCGGCTC CTTCGCCAAG GGCCAGCAGA ACCGCGGCTT CCTCGACAAG GTCGCGCCGA ACAACCCGGT GCTGCTGTCG GACGAGGCGC ACCACAGCCT GTGGGCGAAC AGCAAGGCGA TCGCCGCGGC GGGCGTCACC CGCGACACCA GGGACCCGGC CGGCGGCATC ATCGAGCGCG ACGCGAAGGG CGAGCCCAAC GGCCTGTTCC GCGAGAATGC GGCGGGCCTG CTCGACAAGG CGATGCCCGA GCCGTCCGAC GCGCTGAAGC GCAAGGCGAT GACGCTGTCG ACGCGGCAGA TGCTGTCCTA CGGCATCACC TCCTTCACCG ACGCCTCGGT CCGGGTCGGC AATGTCCGCA CCCTGTCCGG GCTGGCGCGC GACGGCATCA TCAAGCAGCG CGCGCGCGGC TGCATCGTCT GGTCGCCCGG CGACGCCAAT GGCGAGATGC TGATCCGCAC CCGCGCCGAC TATACGGTCG GCCGCTTCAA GGCCGACTGC GTCAAGGTCT TCATGGACGG CGTGCCGACC GAGAGCCAGA CGGCGGCGAT GCTGCATCCC TATCATGGCG ATCCGCACGG GACCGGCATC CTGATGATCC CGCAGGCCGC GCTCAACGAC GGCATCGCGC GGTTCGACCG CATGGGCCTC CACGTCAAGT TCCACGCCGT CGGCGACGCG GCGGTGCGGT CGGCGCTCGA CGCGGTCGAA CATGCCCGCA AGGTCAACGG CTGGGGCGGG TCGGCGCACG AGGTCGGCCA CAACACGTTC GTCGACCGCG CCGACATCCC GCGCGTGCGG GCGCTGCACA TGACCTGGGA GTTCTCGCCC TATATCTGGT ATCCGACGCC GATCACCGAC GTCGACGTCC GCAACGCGGT CGGCGACGAG ATGATGAAGC GCTTCATCCC GATCAAGGAG GCGCTCGACA CCGGCGCCAA CGTCATCGCC GGCTCCGACT GGTCGGTGGT TCCGTCGGTC AATCCCTGGA TCGCGATCGA GACGATGGTG ACGCGCCAGA AGCCGGGCGG CGGCGACAAG ACGATCGCCC CCGACGAGCG CGTCACGCTC GACCAGGCGC TGCGCATCTT CACGTCGGAC GCGGCGGCGG CGATGGGCGA TCGCGATCAG GTCGGCTCGA TCGAGCCCGG CATGCATGCC GACATCGTCG TGACCGAGAC CAACCCGTTC AAGGTTCCGG CCACCCAGAT CCACGACACC AGGGTCCGCA TGACCTTCAT CGACGGCGAA CTGGTCTATG ACGCGGCCAA TCCGCCGCCG CTGACTGCCG ACTGA
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Protein sequence | MMGVAARATA LGAMLLAGAA MAEAPADTIL LNGQVYTPGG WAEALAIRDG VIVAVGDAKA AEAWRGAASK VVDLKGAAVF PGLHDMHVHT QFAGLEQFAC GFPNAAKPAV IAARIKQCAA KAEPGAWIVG GNWSAGSFAK GQQNRGFLDK VAPNNPVLLS DEAHHSLWAN SKAIAAAGVT RDTRDPAGGI IERDAKGEPN GLFRENAAGL LDKAMPEPSD ALKRKAMTLS TRQMLSYGIT SFTDASVRVG NVRTLSGLAR DGIIKQRARG CIVWSPGDAN GEMLIRTRAD YTVGRFKADC VKVFMDGVPT ESQTAAMLHP YHGDPHGTGI LMIPQAALND GIARFDRMGL HVKFHAVGDA AVRSALDAVE HARKVNGWGG SAHEVGHNTF VDRADIPRVR ALHMTWEFSP YIWYPTPITD VDVRNAVGDE MMKRFIPIKE ALDTGANVIA GSDWSVVPSV NPWIAIETMV TRQKPGGGDK TIAPDERVTL DQALRIFTSD AAAAMGDRDQ VGSIEPGMHA DIVVTETNPF KVPATQIHDT RVRMTFIDGE LVYDAANPPP LTAD
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