Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3241 |
Symbol | |
ID | 5197274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3565341 |
End bp | 3567683 |
Gene Length | 2343 bp |
Protein Length | 780 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640582786 |
Product | TonB-dependent receptor |
Protein accession | YP_001263725 |
Protein GI | 148556143 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.188368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.014911 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGC ATTCGTATCT TGGTTGGACC AAGTCGTCGG TTGCCGTCGC AGCGCTGATG CTGCCGGCGA TCGCCCTCGC CCAGGCCGAG CAGCCGGCCG AGGAGCAGTA TAGCGGCGAC ATCGTCGTCA CCGCGACCCG CCAGTCCGAA TCGCTGAGCA AGGTGCCGCT GAGCGTCAGC GCCTTCTCGC AGGAGAAGCT CGACAGCCGC GGCGTCCGCG ACTTCGCCGA CGTCATCCGC CAGACGCCGG GCGTCGTGTT CGAAGCGACC AACACCACCA CCAACATCTC GATCCGCGGC ATCAATTCGA CCGCCGGCGC CGCCACCACC GGCGTCTATA TCGACGACAC GCCGATCCAG ATCCGCGCGC TCGGCTATAG CGGCGGCAAC ACCTATCCGG TGATCTTCGA CCTGGAGCGC GTCGAGGTTC TGCGCGGTCC GCAGGGCACG CTGTTCGGCG CCGGTTCGGA GGGCGGCACG ATCCGCTTCA TCTCGCCGCA GCCGAGCACG ACCAAGTCGT CGGGCTATGC GCGCACCGAA TTCTCGATGA CCGAGGATGG CGGGCCGAGC TACGAGGCCG GCCTCGCCCT CGGCGTTCCG CTGATCCAGG ACAAGCTGGG CGTTCGCGTC AGCGGCTATT ACCGCCGCGA CGGCGGCTGG ATCGACCGTG TCCGCTTCGA GAACAAGGGC GTCGTCGCCG ACGACAGCAA CTACCAGAAC AGCTATGTCG GCCGCATCGC CTTCACCTGG GAGCCGACGC CCGAGCTGAA GATCACGCCG TCGATCGCCT ATCAGAAGGT CTACACCAAC GACAGCCCGG AGACCTGGGA CAATGTCCGC GCCGACCCGA GCGTGCCGGA CGCGCAGTTC TCCAACTATG ACAAGGGCGA GTTCCTCAAC GGCAACCGCG TCCAGGAAAA TGGCCGCGAC CGTTTCTACC TGCCGACGCT CAACGTCCAA TATGCGTTCG GCCCGGTCGA CCTGACCGCG ATCGCCTCCT ATTTCGATCG CAAGCAGACC TTCCGGTCCG ATTACACGCT GTTCGATCAG AGCCTGTTCA CCGGCATCAC CCTGCCGATC TTCCCGAACC AGCAGGGCTT CAGCGACTTC GTCAACACGC AGAAGATCAC CACCGGCGAA ATCCGGCTGG CCTCGTCGGA CCGCGACGCG ATGCTCACCT GGCAGGTCGG CGGCTTCTAC CAGAAGGCGA AACAGGTCTC GATCCAGCAG GTCGACGATC CGTTCCTGTT CCAGTACGCG CCGTTCCTGG TCGGCATCTT CCCGCCGCTG GTCAACGGCC GGCTGATCTA CGACCAGGCG ACCAGCTCGA AGGACGAGCA GATCGCCGCC TTCGGCCAAG TCAACTTCAA GCCGGTCGAC CGGCTGACGC TGACGGTGGG CCTGCGCTAC GGCCAGACCA AGTTCAACAT CAATTCCTTC GCGCAAGGGC CGGTCGTCGG CCCGGCGGTG ACCGACGTCG GCCGCCAGAA GGAGAAGCCG TTCACGCCCA AGTTCGGCGC CGAGTTCCAG GTGACGCCGA GCACGCTGGT CTACGCCTCG GCCTCGAAGG GCTTCCGTCC GGGCGGCTAC AACCCGCAGG TCGGCGTCCC CTGCCAGGCC AGCGATCTCG ATCCGCTCGG CTATCCGAAC GGCCGCCCGA CGACCTATGA CTCGGACTCG GTGTGGAGCT ACGAGCTCGG CCTCAAGACC CGCACCGGCC GCTTCAGCGC GCAGGGCAGC GTCTACCAGA TCGACTGGAA GAACATCCAG CAGGTCGTCG GCCTCGGCGG CTGCGGCTTC CAGTTCACCG CCAATCTGGG CTCGGCGCGG AGCCGCGGCT TCGACCTCCA GCTCGACTAT CGCCTGACCG ACGATTTCAC CGTCCAGGCC GAGGTCGGCT ACACCAACGC CAAGTTCCTC GACACCTTCT TCGGCGGTCC GCTCGCCACG GTGCCGCTGG TGACCAAGGG CAACCATGTG GTGTCGCCGC CGTGGACGGT GTCGGTGCAC GGTCAGTATG ACCTGTCGTT GCGCGACCAC CACGACTCCT ACGTCCGCGC CGACTTCGAC TATCGTTCGC GGCAGTCGAG CCTGACCCCG GGCATCGATC CGCGCAACGG CGGCACGGAT CCGACGCTGA GCAACGCGCC AGCGCTCAAG GCGCTGTCGA TGCGCGCGGG CTACCGCATC AACGGCATCG ACCTGTCGCT GTTCGTCAAC AACCTGCTCG ACCAGGCCGT CTGGCAGGGC CGCCGCGCCC GCGACAACAA CAATGCCACG GTCTACAAAT CATATGTCGT GCGGCCGCGC ACCTTCGGCG CGACCATCGC CTACCGCTTC TAG
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Protein sequence | MKKHSYLGWT KSSVAVAALM LPAIALAQAE QPAEEQYSGD IVVTATRQSE SLSKVPLSVS AFSQEKLDSR GVRDFADVIR QTPGVVFEAT NTTTNISIRG INSTAGAATT GVYIDDTPIQ IRALGYSGGN TYPVIFDLER VEVLRGPQGT LFGAGSEGGT IRFISPQPST TKSSGYARTE FSMTEDGGPS YEAGLALGVP LIQDKLGVRV SGYYRRDGGW IDRVRFENKG VVADDSNYQN SYVGRIAFTW EPTPELKITP SIAYQKVYTN DSPETWDNVR ADPSVPDAQF SNYDKGEFLN GNRVQENGRD RFYLPTLNVQ YAFGPVDLTA IASYFDRKQT FRSDYTLFDQ SLFTGITLPI FPNQQGFSDF VNTQKITTGE IRLASSDRDA MLTWQVGGFY QKAKQVSIQQ VDDPFLFQYA PFLVGIFPPL VNGRLIYDQA TSSKDEQIAA FGQVNFKPVD RLTLTVGLRY GQTKFNINSF AQGPVVGPAV TDVGRQKEKP FTPKFGAEFQ VTPSTLVYAS ASKGFRPGGY NPQVGVPCQA SDLDPLGYPN GRPTTYDSDS VWSYELGLKT RTGRFSAQGS VYQIDWKNIQ QVVGLGGCGF QFTANLGSAR SRGFDLQLDY RLTDDFTVQA EVGYTNAKFL DTFFGGPLAT VPLVTKGNHV VSPPWTVSVH GQYDLSLRDH HDSYVRADFD YRSRQSSLTP GIDPRNGGTD PTLSNAPALK ALSMRAGYRI NGIDLSLFVN NLLDQAVWQG RRARDNNNAT VYKSYVVRPR TFGATIAYRF
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