Gene Swit_3241 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3241 
Symbol 
ID5197274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3565341 
End bp3567683 
Gene Length2343 bp 
Protein Length780 aa 
Translation table11 
GC content66% 
IMG OID640582786 
ProductTonB-dependent receptor 
Protein accessionYP_001263725 
Protein GI148556143 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.188368 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.014911 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGC ATTCGTATCT TGGTTGGACC AAGTCGTCGG TTGCCGTCGC AGCGCTGATG 
CTGCCGGCGA TCGCCCTCGC CCAGGCCGAG CAGCCGGCCG AGGAGCAGTA TAGCGGCGAC
ATCGTCGTCA CCGCGACCCG CCAGTCCGAA TCGCTGAGCA AGGTGCCGCT GAGCGTCAGC
GCCTTCTCGC AGGAGAAGCT CGACAGCCGC GGCGTCCGCG ACTTCGCCGA CGTCATCCGC
CAGACGCCGG GCGTCGTGTT CGAAGCGACC AACACCACCA CCAACATCTC GATCCGCGGC
ATCAATTCGA CCGCCGGCGC CGCCACCACC GGCGTCTATA TCGACGACAC GCCGATCCAG
ATCCGCGCGC TCGGCTATAG CGGCGGCAAC ACCTATCCGG TGATCTTCGA CCTGGAGCGC
GTCGAGGTTC TGCGCGGTCC GCAGGGCACG CTGTTCGGCG CCGGTTCGGA GGGCGGCACG
ATCCGCTTCA TCTCGCCGCA GCCGAGCACG ACCAAGTCGT CGGGCTATGC GCGCACCGAA
TTCTCGATGA CCGAGGATGG CGGGCCGAGC TACGAGGCCG GCCTCGCCCT CGGCGTTCCG
CTGATCCAGG ACAAGCTGGG CGTTCGCGTC AGCGGCTATT ACCGCCGCGA CGGCGGCTGG
ATCGACCGTG TCCGCTTCGA GAACAAGGGC GTCGTCGCCG ACGACAGCAA CTACCAGAAC
AGCTATGTCG GCCGCATCGC CTTCACCTGG GAGCCGACGC CCGAGCTGAA GATCACGCCG
TCGATCGCCT ATCAGAAGGT CTACACCAAC GACAGCCCGG AGACCTGGGA CAATGTCCGC
GCCGACCCGA GCGTGCCGGA CGCGCAGTTC TCCAACTATG ACAAGGGCGA GTTCCTCAAC
GGCAACCGCG TCCAGGAAAA TGGCCGCGAC CGTTTCTACC TGCCGACGCT CAACGTCCAA
TATGCGTTCG GCCCGGTCGA CCTGACCGCG ATCGCCTCCT ATTTCGATCG CAAGCAGACC
TTCCGGTCCG ATTACACGCT GTTCGATCAG AGCCTGTTCA CCGGCATCAC CCTGCCGATC
TTCCCGAACC AGCAGGGCTT CAGCGACTTC GTCAACACGC AGAAGATCAC CACCGGCGAA
ATCCGGCTGG CCTCGTCGGA CCGCGACGCG ATGCTCACCT GGCAGGTCGG CGGCTTCTAC
CAGAAGGCGA AACAGGTCTC GATCCAGCAG GTCGACGATC CGTTCCTGTT CCAGTACGCG
CCGTTCCTGG TCGGCATCTT CCCGCCGCTG GTCAACGGCC GGCTGATCTA CGACCAGGCG
ACCAGCTCGA AGGACGAGCA GATCGCCGCC TTCGGCCAAG TCAACTTCAA GCCGGTCGAC
CGGCTGACGC TGACGGTGGG CCTGCGCTAC GGCCAGACCA AGTTCAACAT CAATTCCTTC
GCGCAAGGGC CGGTCGTCGG CCCGGCGGTG ACCGACGTCG GCCGCCAGAA GGAGAAGCCG
TTCACGCCCA AGTTCGGCGC CGAGTTCCAG GTGACGCCGA GCACGCTGGT CTACGCCTCG
GCCTCGAAGG GCTTCCGTCC GGGCGGCTAC AACCCGCAGG TCGGCGTCCC CTGCCAGGCC
AGCGATCTCG ATCCGCTCGG CTATCCGAAC GGCCGCCCGA CGACCTATGA CTCGGACTCG
GTGTGGAGCT ACGAGCTCGG CCTCAAGACC CGCACCGGCC GCTTCAGCGC GCAGGGCAGC
GTCTACCAGA TCGACTGGAA GAACATCCAG CAGGTCGTCG GCCTCGGCGG CTGCGGCTTC
CAGTTCACCG CCAATCTGGG CTCGGCGCGG AGCCGCGGCT TCGACCTCCA GCTCGACTAT
CGCCTGACCG ACGATTTCAC CGTCCAGGCC GAGGTCGGCT ACACCAACGC CAAGTTCCTC
GACACCTTCT TCGGCGGTCC GCTCGCCACG GTGCCGCTGG TGACCAAGGG CAACCATGTG
GTGTCGCCGC CGTGGACGGT GTCGGTGCAC GGTCAGTATG ACCTGTCGTT GCGCGACCAC
CACGACTCCT ACGTCCGCGC CGACTTCGAC TATCGTTCGC GGCAGTCGAG CCTGACCCCG
GGCATCGATC CGCGCAACGG CGGCACGGAT CCGACGCTGA GCAACGCGCC AGCGCTCAAG
GCGCTGTCGA TGCGCGCGGG CTACCGCATC AACGGCATCG ACCTGTCGCT GTTCGTCAAC
AACCTGCTCG ACCAGGCCGT CTGGCAGGGC CGCCGCGCCC GCGACAACAA CAATGCCACG
GTCTACAAAT CATATGTCGT GCGGCCGCGC ACCTTCGGCG CGACCATCGC CTACCGCTTC
TAG
 
Protein sequence
MKKHSYLGWT KSSVAVAALM LPAIALAQAE QPAEEQYSGD IVVTATRQSE SLSKVPLSVS 
AFSQEKLDSR GVRDFADVIR QTPGVVFEAT NTTTNISIRG INSTAGAATT GVYIDDTPIQ
IRALGYSGGN TYPVIFDLER VEVLRGPQGT LFGAGSEGGT IRFISPQPST TKSSGYARTE
FSMTEDGGPS YEAGLALGVP LIQDKLGVRV SGYYRRDGGW IDRVRFENKG VVADDSNYQN
SYVGRIAFTW EPTPELKITP SIAYQKVYTN DSPETWDNVR ADPSVPDAQF SNYDKGEFLN
GNRVQENGRD RFYLPTLNVQ YAFGPVDLTA IASYFDRKQT FRSDYTLFDQ SLFTGITLPI
FPNQQGFSDF VNTQKITTGE IRLASSDRDA MLTWQVGGFY QKAKQVSIQQ VDDPFLFQYA
PFLVGIFPPL VNGRLIYDQA TSSKDEQIAA FGQVNFKPVD RLTLTVGLRY GQTKFNINSF
AQGPVVGPAV TDVGRQKEKP FTPKFGAEFQ VTPSTLVYAS ASKGFRPGGY NPQVGVPCQA
SDLDPLGYPN GRPTTYDSDS VWSYELGLKT RTGRFSAQGS VYQIDWKNIQ QVVGLGGCGF
QFTANLGSAR SRGFDLQLDY RLTDDFTVQA EVGYTNAKFL DTFFGGPLAT VPLVTKGNHV
VSPPWTVSVH GQYDLSLRDH HDSYVRADFD YRSRQSSLTP GIDPRNGGTD PTLSNAPALK
ALSMRAGYRI NGIDLSLFVN NLLDQAVWQG RRARDNNNAT VYKSYVVRPR TFGATIAYRF