| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3231 |
|---|
| Symbol | |
|---|
| ID | 5197033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3552359 |
|---|
| End bp | 3553822 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640582776 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001263715 |
|---|
| Protein GI | 148556133 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.292382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT CGATCCCGCT CCGTCGCCCG GCGTTGCTCG CCGGCCTCGT CGCGACCCTG
CTGTCGGGTT GCGCGGCGGT GCCGCAGGTC CGGCCGCAGG TGCAGGCCGC TTCCGCCGCG
ACGGCCGGCC TCGACGGCGG CGCGGCGCTG GCGCCGGTCG GCGACTGGTG GCACGGCTTC
GGCGATCCGC AGCTCGACCG GATCATGGCC GAGGCGCTGG CCGGCAATCC CTCGCTCGAC
GTCGCGATGG CGCGGCTGGC GCGGGCGCAG GCCGGGATCG CCGCGAACAA GGCCGGGCTG
CTGCCGCAGG TCGGCGTCGA CGCCTCGGCG ATCCGCCAGC GGCTCAGCGA GAAATACATC
ATCCCGCCGC CCTATGGCGG CAGCAACCGC TGGATCGGCG ACGCCCAGGC GAAGCTCGAC
TGGTCGCTCG ACCTCGCCGG CCGGCAGAAG GCGCTGGTCG CGCAGGCGGG CGCCTCGGCC
GACGCCGCCG CGCTCGACGT CGAGGCGGCG CGGGTGACGC TGTCGGGCGC GGTCGCGCAA
AGCTATGTCG ACCTCGCCCG CGCCACCGAG CAGGCGCGCA TCGCCCGGCG CTTCGTCGCC
TCGCGCGAGG AGCAGCTTCG GCTCGCCGGC ACCCGCAAGC GCACCGACCT GGGCAGCGAC
TTCGACCTGC GCGCCGCCGA GACGCTGCTC GCCGAGGCGC GCCAGGCCGG GATCCGCGCC
GAGGGCGCCC GCCAGCTCAT GGTCCACGCG CTCGCCGCGC TCGCCGGGCG CGGCGCCGAC
TATCATGCCG CGATCGCCGA CCCGACGATC CGGCTCGACG CGGCGCTGCC GGTGCCCGAC
GCGCTGCCCG CCGACCTGCT CGGCCGCCGC CCCGACATCC TCGCCGCCCG CGCCCGGATC
GAGGCGGCCG AGGCGGGCCG CAAGGTCGCC CGCGCCGATT TCTACCCCGA CATCGACCTG
AAGGGCTTCA TCGGCCTGCA GGCGATCGGC CTCGGCGCGC TGTTCACCGG CGGCGCCGCG
ACCTATGGCG CTGGCCCGGC GCTGCACCTG CCGATCTTCG AGGGCGGCCG GCTCAAGGCC
AATTACAAGG GCGCGGTCGC CGGGATCGAC GAGGCGGTCG CCAGCTATAA CGGCGCCGTC
GTCGGCGCGG TCCGCGAGAC CGCCGACGCG CTCTCCGCGA TCGCCACCAA CGCCGCCGAC
GCCGCCGAGC AGCACAAGGT CGTCGCCGGG CTGGGCGAGA CCGTCCGGCT CGACGAGGTG
CGGCTGCGCA CCGGGCTCGG CGCGCGGCTC GACGTGCTCG ACGCGGGCGA CCGGCTGCTC
GCCGCCAACC AGCGCGAGGT CGACCTCGCC GCCGACGGCG CCGCCGCCCG CATCCGCCTG
CTCGTCGCGG TCGGCGGCAG CTTCGATCCG CACAGCCGCC AGAATCTCGC ATCGGCCGCC
GGTGCCGACG CCGCAGGGAG ATAA
|
|---|
| Protein sequence | MPRSIPLRRP ALLAGLVATL LSGCAAVPQV RPQVQAASAA TAGLDGGAAL APVGDWWHGF
GDPQLDRIMA EALAGNPSLD VAMARLARAQ AGIAANKAGL LPQVGVDASA IRQRLSEKYI
IPPPYGGSNR WIGDAQAKLD WSLDLAGRQK ALVAQAGASA DAAALDVEAA RVTLSGAVAQ
SYVDLARATE QARIARRFVA SREEQLRLAG TRKRTDLGSD FDLRAAETLL AEARQAGIRA
EGARQLMVHA LAALAGRGAD YHAAIADPTI RLDAALPVPD ALPADLLGRR PDILAARARI
EAAEAGRKVA RADFYPDIDL KGFIGLQAIG LGALFTGGAA TYGAGPALHL PIFEGGRLKA
NYKGAVAGID EAVASYNGAV VGAVRETADA LSAIATNAAD AAEQHKVVAG LGETVRLDEV
RLRTGLGARL DVLDAGDRLL AANQREVDLA ADGAAARIRL LVAVGGSFDP HSRQNLASAA
GADAAGR
|
|---|
| |