| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3230 |
|---|
| Symbol | |
|---|
| ID | 5197032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3551168 |
|---|
| End bp | 3552355 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640582775 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001263714 |
|---|
| Protein GI | 148556132 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.267939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCC ACACCCAGAT CCAGAAGGAC GAGACCGTCG AGCGGCAGCA GGCGCTCCGC
ACCCGCAAGC GCGGCTTCCT GATGCTCGGC GCGGCGGTGC TGATCGCCGG CGCGGCCTAT
GGCGGCTACG AGCTGCTCGC GCCGAGCAGC GAGACGACCG ACGACGCCTA TGTCGCGGGC
GACGTGGTGG CGATCACCGC GCGCGAGCCG GGCACGGTGC TGGCGATCAA CGCCGACAAC
ACCGAGAGCG TCAGGCGCGG CCAGACGCTG ATCGAGTTCG ACCCCGCCAC CGCCGACGCG
CAGATGGCCT CGGCCGAGGC CAGCCTCGCC CGCGCGGTGC GCTCGGTCCG CTCCGACTTC
TCCAAGGTCG ACGAGACCGG CGCCGAGATC CTCCAGGCCG AGGCCGAGCT GACCCGCGCC
CGCAACGACC TGGCGCGCCG CCGCGCCGCC GCCGCCGAGG GCGCGGTGTC GGGCGAGGAG
GTGGCGCACG CCGCCGACAG CGTCCGCACC GCCGCCGCCG CGCTCACCCT CGCCCGCAGC
CGGCAGGCGC AGGCGCGCTC GACGGTCGAG GGCACCCGGG TCGAGACCAA TCCCGACGTG
CTCGCCGCCG TCGCCGCCGT CCGCCGCGCC GCGATCGTCC AGGGGCATAT GCACCTGGTC
GCTCCGCTCG ACGGCGTCGT CGCGCAGCGC ACCGTCCAGC TCGGCCAGCA GGTCAATCCC
GGCACGCCGC TGATGGCGGT GGTGCCGCTC GACCGGCTGT GGATCGACGC CAATTTCCGC
GAGACCCAGA TCGCCGAACT GCGGGTCGGG CAGCCGGTCG AGATCAGGAC CGACATCTAT
GGCGGCGCGG TCACCTATCA TGGCAAGCTG CTCGGCCTCG GCGCGGGCAG CGGCAACGCC
TTCGCGCTGC TGCCGCCGCA GAACGCCAGC GGCAACTGGA TCAAGATCGC CCAGCGCGTG
CCGGTCCGCA TCGCGCTCGA CCCCGCCGAG CTGCGCGCCA ACCCGCTCAG GATCGGCGTA
TCGGCCAAGG TGACGGTCGA CACCAGCGAC CATCGCGGCG TCCCCGTCGC CCGCGTCGCC
GCCCCGCCGG TGCCGCGCCA GACGAGCCAG GACGGCGGCC CCCGGGTCGA GGCGCGGATC
GCCTCGATCA TCGCCGCCAA CAGCGGTGGC CGGGCATCGG TCCGGTGA
|
|---|
| Protein sequence | MNAHTQIQKD ETVERQQALR TRKRGFLMLG AAVLIAGAAY GGYELLAPSS ETTDDAYVAG
DVVAITAREP GTVLAINADN TESVRRGQTL IEFDPATADA QMASAEASLA RAVRSVRSDF
SKVDETGAEI LQAEAELTRA RNDLARRRAA AAEGAVSGEE VAHAADSVRT AAAALTLARS
RQAQARSTVE GTRVETNPDV LAAVAAVRRA AIVQGHMHLV APLDGVVAQR TVQLGQQVNP
GTPLMAVVPL DRLWIDANFR ETQIAELRVG QPVEIRTDIY GGAVTYHGKL LGLGAGSGNA
FALLPPQNAS GNWIKIAQRV PVRIALDPAE LRANPLRIGV SAKVTVDTSD HRGVPVARVA
APPVPRQTSQ DGGPRVEARI ASIIAANSGG RASVR
|
|---|
| |