| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3219 |
|---|
| Symbol | trpC |
|---|
| ID | 5196199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3538990 |
|---|
| End bp | 3539784 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582765 |
|---|
| Product | indole-3-glycerol-phosphate synthase |
|---|
| Protein accession | YP_001263704 |
|---|
| Protein GI | 148556122 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0134] Indole-3-glycerol phosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0365471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA AGCTGACCGA GATCTGCGAC ACCAAGCGCG ATCATGTCGC CCGCCGCAAG
GCGGAGACCT CCTTCGCCGA GCTGACGGCG CGGGCCAAGG CCGCCGACGC GCCGCGCGGC
TTCCGCGCCG CGCTCGACCG CAAGGTGGCC GAGGGCGGCT ATGGCCTGAT CGCCGAGATC
AAGAAGGCGT CGCCGTCCAA GGGGCTGATC CGTCCCGATT TCGATCCGCC CGCCCATGCC
CGCGCCTATC AGGCGGCGGG GGCTGCCTGC CTGTCGGTGC TCACCGACAT GCCCTATTTC
CAGGGCCATG ACGACTATCT GGTGCAGGCG CGCGCCGCCT GCGCGCTGCC GGCGCTGCGC
AAGGACTTCA TCGTCGATCC CTGGCAGGTG ACCGAGGCCC GCGCGCTGGG CGCCGACGCG
ATCCTGATCA TCGTCGCCGC GCTCGACGAC GGCCAGATGG CCGAGATCGA GGCCGCCGCG
ATCGAGCATG GCATGGACGC GCTGGTCGAG GTCCACGACG CCGACGAGTT CGACCGGGCG
TTGCGACTGC GCTCGCGGCT GATCGGCGTC AACAACCGCG ACCTGCGCGA CTTCACCATC
GACTTCGCCC GCACCTACGA GCTGGTCGGC CACGCGCCCG CGGGCTGCAC CTTCGTCGCC
GAGAGCGGGC TCGGCTCCAA GGCCGACCTC GACGCCATGG CGGACCATGG CGTGGGCTGC
TTCCTGGTCG GGGAATCGCT GATGCGGCAG GACGACCTCG CCGCGGCGAC GCGCAGGCTG
CTGACCGGGG CATGA
|
|---|
| Protein sequence | MSNKLTEICD TKRDHVARRK AETSFAELTA RAKAADAPRG FRAALDRKVA EGGYGLIAEI
KKASPSKGLI RPDFDPPAHA RAYQAAGAAC LSVLTDMPYF QGHDDYLVQA RAACALPALR
KDFIVDPWQV TEARALGADA ILIIVAALDD GQMAEIEAAA IEHGMDALVE VHDADEFDRA
LRLRSRLIGV NNRDLRDFTI DFARTYELVG HAPAGCTFVA ESGLGSKADL DAMADHGVGC
FLVGESLMRQ DDLAAATRRL LTGA
|
|---|
| |