| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3190 |
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| Symbol | |
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| ID | 5198881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3500926 |
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| End bp | 3502695 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640582736 |
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| Product | polypeptide-transport-associated domain-containing protein |
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| Protein accession | YP_001263675 |
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| Protein GI | 148556093 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.376319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTAGCT CGCTCTTCTC GACGGCCGTC GCCACGGCCT TGCTCGCCGC ATCGTCTTCG
CAGATCGCCC TGGCGCAGAT CGTCGCGCCC GGCACCGGGC AGCAGATCGC GCCCGGCCGC
GACGAGCTCC AGGACAGGAC CCGCCAGCAG CCGGCGGCCC CGTCGCGCCT CAAGATCGAA
GGCGACATCG AGCGCGCGCC CTGCGCGCTC GACTCGCCCG CTTATGCGAA CCTCAGGGTC
ACGATCAACG AGGTCCAGTT CAACAACCTC CAGGGCGTCA GCCCGGAGGA GCTTCGCGAG
TCCTACGCCT CGCTGCTCGG CGCCGACCGG CCGGTCAGCA CGATCTGCAC GATCCGCGAC
GCCGCCGCGA CCGCGCTGCG CCGCAAGGGC TATCTCGCCG CGGTGCTGGT GCCGGTGCAG
AAGATCGAGG ACGGCGTCGT CCGGTTCGAG GTGCTGTTCG CCAAGGTCGT CCAGGTCCGG
GTGCGCGGCG AGGCCGGCAA TGCCGAGACG GTGCTGGCCT CCTACCTGTC GCACCTGACC
GAGGAGAAGG TGTTCAACCG CTATGTCGCC GAGCGCTACC TGCTGCTCGC GCGCGACATG
CCGGGCTATG AGGTCCGCCT CGTGCTCAAG CCCGCCGGCA CCGCGCCGGG CGAGCTGATC
GGCGAGGTCA GCGTCATCCA CACCCCGATC GAGGTCAATG CGAGCCTCCA GAATTTCTCG
GCGCGCAGCT CGGGCCGCTG GACCGGCGCG GTGCAGGCGC AGGTCTATGG CCTGCTCGGC
GCCGACCGGC TGACCGCCTC GGTGTCGAGC ACCGCCGACT TCAAGGAGCA GCAGGTCGTC
CAGCTCGGCT ATGAGACGAA GCTGGGTGGC GAGGGGCTGA CGGTCGCGGG CAACTTCACC
TATGCCTGGT CGAAGCCCGA CGTGCGGATA CCGGGCTTCC CCGGCCTCGA CCTGACCGCG
CGGACGCTGT TCGCGACCGG GGAGCTGCGC TATCCGCTGA TCCGGACGCA GCGCTTCAGC
CTGGTCGGCG CGGCCGGCAT GGACTTCGTC AACCAGACGG TGCGGTTCGC CGGCCAGGAC
CTGACCCGCG ACCGGCTGCG CGTCGGCTTC CTCCGCCTCG ACATGGACAT GGGCGACGTG
CCCGAGGGAC GCGCGCCGAC CTGGCGCGCC TCGGGCACGC TCGAATTCCG CCAGGGGCTC
GACCTGTTCG ACGCCTCGCC GCGCCCGCGC TTCCCGCTGC CGACGGTTCG TCCGGCGCGG
ACCGACGGCG ATCCGACCTC CAGCCTGATC CGCGGATCGG CCGCGATCGA ATATAATCTC
GGCAAGGGCT TCTGGTTCGC GGCGCTGCCG CGCTTCCAAT ATGCCTTCGA TCCGTTGTTC
AGCTTCGAGG AATTCTCGGC CGGCAACTAT TCGATCGGCC GCGGCTACGA CCCTGGCACG
ATCATCGGCG ACAGCGGCCT GGGCAGCGGC TTCGAGCTGC GCCTGCCGCG CTTCCAGCCG
CTCGAGAAGA CCCATCTGGC GGTGCAGCCC TTCGTCTTCA CCGACCTCGC CTGGGTCTGG
AACAAGCGCA ACGCCTTCAC TTTCCCGCTG CCGGCGAACC CCAATTTCCT CGCTTCGGCG
GGCGGCGGCT TCCGCGCGGT GCTCGACAAC CGCTTCCGGA TCGAGGGCAC GGTCGCGGTG
CCGCTCAAGG CGGCGGGTCT GCAGACCCAC AACCATGATC CGCGTTTCCT CGTATCTCTG
GTGACCAAGC TCTGGCCGTG GGGCAATTGA
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| Protein sequence | MRSSLFSTAV ATALLAASSS QIALAQIVAP GTGQQIAPGR DELQDRTRQQ PAAPSRLKIE
GDIERAPCAL DSPAYANLRV TINEVQFNNL QGVSPEELRE SYASLLGADR PVSTICTIRD
AAATALRRKG YLAAVLVPVQ KIEDGVVRFE VLFAKVVQVR VRGEAGNAET VLASYLSHLT
EEKVFNRYVA ERYLLLARDM PGYEVRLVLK PAGTAPGELI GEVSVIHTPI EVNASLQNFS
ARSSGRWTGA VQAQVYGLLG ADRLTASVSS TADFKEQQVV QLGYETKLGG EGLTVAGNFT
YAWSKPDVRI PGFPGLDLTA RTLFATGELR YPLIRTQRFS LVGAAGMDFV NQTVRFAGQD
LTRDRLRVGF LRLDMDMGDV PEGRAPTWRA SGTLEFRQGL DLFDASPRPR FPLPTVRPAR
TDGDPTSSLI RGSAAIEYNL GKGFWFAALP RFQYAFDPLF SFEEFSAGNY SIGRGYDPGT
IIGDSGLGSG FELRLPRFQP LEKTHLAVQP FVFTDLAWVW NKRNAFTFPL PANPNFLASA
GGGFRAVLDN RFRIEGTVAV PLKAAGLQTH NHDPRFLVSL VTKLWPWGN
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