| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3167 |
|---|
| Symbol | |
|---|
| ID | 5197825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3478208 |
|---|
| End bp | 3479650 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 640582714 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001263653 |
|---|
| Protein GI | 148556071 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.487226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAAGC GCGCCGCGAC ATTGTTCGCC GCCGCGCTGC TCGCGGGGTG CGCGGCGGTC
GGCCCGAACT ATCATCTGCC CGAGGCCGCC GCGGTGCGCG CGCCCGAGGC GCAAGGCGCC
TTCCTGTCGG GCGGCACGGC GGCGACGGCC GAGCCGCTCC CCGACCATTG GTGGACGCTC
TACGACGATC CGCTGCTCGA CGGGCTGGTC GAACGGGCGC TGGCCGCCAA CACGGATCTG
CGCGTCGCCG AGGCCAATCT CGACCGCAGC CTCGCCCTGC TCGACCAGCG CGAGGCCGGG
CGCGAGATCC AGGGCGGCGC CAATGTCGAG ACGAGCTGGG CGCAGCGATC GGCCGAGGCC
GAGCTGCAGC ACGTCAAGCC GCCGACCCGG CAGATCTACA ATGCCGGCCT GGGGGTGAGC
TACGACCTCG ACCTGTTCGG CGGCCTGCGG CGCGGGATCG AGGCGGCGAG CGCGGACGCC
GAGGCGGCGG TCGCGGCGCG CGACCTCGTG CGGGTCAACG TCGCGGCCGA GACCGCGCGC
GCCTATGCCG ACATCTGCAA CGCCGGCCAT CAGATCGACG TGCTCGGCCG CGCGATCGCG
CTCCAGGAGC GCGGCGTCGG GCTGACGCGG ACGCTGATCG CCCATGGCCG CGCCGCGCCC
TATGAGCTCG ACCGGCGGCA GGGCCTGCTG GAGACCAGCC GCGCCCGCCT GCCCCGGCTC
GCGGCGCGGC AACGCAACGC GCTGCTGCGC GTCACCGCGC TGGCGGGGGC GATGCCGGCG
CAGGCCGATG CCGGGCTGCT GCAATGCCGC CGGCCGCTCG AACTGGCGCG CGCGGTTCCG
GCCGGCGACG GCGAGGCGCT GCTCCGCCGC CGGCCCGACA TCCGCATGGC GGAGCGGCGG
CTGGCCGCCA CCACCGCGCG GATCGGCGTC GCGACGGCGG ACCTCTATCC GTCGATCCGC
ATCGGTGCGT CGATCGGATC GACCGGCGCC GCCGCCGACG CCTTCTCGCC GCTCACCAAC
CGCTTCGGCA TCGGCCCGCT GATCGACTGG ACGCTCAACC GCCACGCCGC CCGCGCCCGG
ATCGCCGCGA CCGAGGCGCA GGGCCGCGCC GACCTCGCCG CGTTCGACGG CGTCGTCCTC
GCCGCGCTGC GCGAGGTCGA GACCGCGCTG GTCGGCTATG CCGCCGGGCT CGACCGGCAG
GCGAGCCTCG ACCGCGCCCG CGACGACGCC GCGCGCGTCG CCGCGCAGAC CGCGCAGCTC
CGGCGCGGCG GCCGGATCGC CGAGCTGCCC GCGCTCGAAG CCGAACGCGA CCTCGTCGCC
GCCGAACAGG CCGCCGCCGA GGGCCGCGCC GCGCTCAACG AGGAGCAGAT CGCGCTGTTC
CTCGCGCTGG GCGGCGGGTG GACGGCGGAC GCCGCCGCGA AGGATGGGGC CGGCCCGCGC
TGA
|
|---|
| Protein sequence | MVKRAATLFA AALLAGCAAV GPNYHLPEAA AVRAPEAQGA FLSGGTAATA EPLPDHWWTL
YDDPLLDGLV ERALAANTDL RVAEANLDRS LALLDQREAG REIQGGANVE TSWAQRSAEA
ELQHVKPPTR QIYNAGLGVS YDLDLFGGLR RGIEAASADA EAAVAARDLV RVNVAAETAR
AYADICNAGH QIDVLGRAIA LQERGVGLTR TLIAHGRAAP YELDRRQGLL ETSRARLPRL
AARQRNALLR VTALAGAMPA QADAGLLQCR RPLELARAVP AGDGEALLRR RPDIRMAERR
LAATTARIGV ATADLYPSIR IGASIGSTGA AADAFSPLTN RFGIGPLIDW TLNRHAARAR
IAATEAQGRA DLAAFDGVVL AALREVETAL VGYAAGLDRQ ASLDRARDDA ARVAAQTAQL
RRGGRIAELP ALEAERDLVA AEQAAAEGRA ALNEEQIALF LALGGGWTAD AAAKDGAGPR
|
|---|
| |