| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3142 |
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| Symbol | |
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| ID | 5199551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3455359 |
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| End bp | 3456873 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640582689 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001263628 |
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| Protein GI | 148556046 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.228512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACG ACCTGGTAGC GCGGCTGACG CTGCGCCCGT CCGACACGGC GGCGGCCGGG
GAGCTCGCCT CCGCCGCGCT CGACGCCGAG GCCGAGGAGG CGGCGCTGCC GCTCGTCACC
GCCGCCGCCG AGCGGCACCG CGACAACGGC CGGCTGTGGC AATGGACCGG CCTGCTCCAC
CGCGCGATCG GCGAGCATGA CAAGGCGCTG CCGGCGTTCA ACGCAGCGGC GAAGGCGGCC
CCCTCCGACG CCAGCATCGC CCAGGGCCGC GCCCAGGTCG CGCTGGAGGC CGGGCTCGAC
GCGGTCGGCC TGTTCGATGC GGCGATCGCA CTGGCGCCGG CCAATGGCGA CCTGCTGCTG
GGCCGCGCCG CCGCGCGGGT CGCGGCCGGC GACGCGCCCC GCGCGATGGC CGAGATCGAG
GCGCTGCTCG CGCAGCATCC CGGCTGGTAT CCCGGCCATG ACCGGCTGAT CCAGCTCCGC
TGGATGATGG GCGACCGCGA CCGCGCGACC GAACTGGTCG AGCGCACCAT CGCCGCCCAT
CCGGGCGACC TCACCCTGTG GCGCATCCTG CTCACGGCAC TGGTCAACGC CGGGCGCCAT
GGCGCGGTGC TCGACGCCGT CCGGCGCGGC CGCGCGGCGC TCGGCGAGCA GCTCACCTTC
ACCGCGAACG AGGCGATCGC CCTGTCAGAG ACCGGCGCCG TCGCCGAGGC CGACCGGCTG
TTCGCGCTGC TGACCCGCGC CGACGACCTG TCGGTCGCGG TCCGCCACGT CCGCCACCTG
CTGCGCACCC GGCGGATCGA CGCGGCGCTG CCGATCATCG ACCGCTGGGC GAGCCCGCAG
GGCGACCGGC GCGGGATGTG GCCTTATGCC GCGATCGCCT GGCGGCTGGC GGGCGACCCG
CGCGCCGCCT GGCTGGAGGA CGATCCCGCC TTCGTCCGAG TGATCGACCT CGCCGATCGT
CTCCCCGATC TCGACCGCCT CGCCCATGTC CTGCGCGGGC TCCACCGCGC CAGGGGCGAG
CATCTCGACC AGTCGGTGCG CGGCGGCACC CAGACCGACG GGCCGCTGTT CAGCCGGATC
GAGCCCGAGA TCCGCGCGCT GCGCGCCGCG GTCCTCGACG CGGTGGCGAG CCACATCGCC
CAGCTCCCCG ATCCCGATCC GCGCCACCCG CTGCGCGCCT ATGGCCGCCC GGCGCGACCG
CGCTTCGCGG GCTCCTGGTC GGTGCGGCTG ACCGGCGAGG GGCATCATGC CAACCACGTC
CACCCCGCCG GGCTGATCAG CTCGGCCTTC TACCTGACCG TGCCCGACGC GGTGCGTGAC
GGCGGGACCG ACGGCTGGCT GACCCTCGGC AGCCCCCAGG CCGAGCTCGG CCTTTCGATC
GAACCCACCC GGACGATCGA GCCGCGCCCC GGCCGCCTCG TCCTCTTCCC GTCGACGATG
TGGCACGGCA CCCGGCCGTT CCGCGACGGC GAGCGCCTGA CCGTCGCCTT CGACATCGCC
CTTCCCCTTC GCTGA
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| Protein sequence | MIDDLVARLT LRPSDTAAAG ELASAALDAE AEEAALPLVT AAAERHRDNG RLWQWTGLLH
RAIGEHDKAL PAFNAAAKAA PSDASIAQGR AQVALEAGLD AVGLFDAAIA LAPANGDLLL
GRAAARVAAG DAPRAMAEIE ALLAQHPGWY PGHDRLIQLR WMMGDRDRAT ELVERTIAAH
PGDLTLWRIL LTALVNAGRH GAVLDAVRRG RAALGEQLTF TANEAIALSE TGAVAEADRL
FALLTRADDL SVAVRHVRHL LRTRRIDAAL PIIDRWASPQ GDRRGMWPYA AIAWRLAGDP
RAAWLEDDPA FVRVIDLADR LPDLDRLAHV LRGLHRARGE HLDQSVRGGT QTDGPLFSRI
EPEIRALRAA VLDAVASHIA QLPDPDPRHP LRAYGRPARP RFAGSWSVRL TGEGHHANHV
HPAGLISSAF YLTVPDAVRD GGTDGWLTLG SPQAELGLSI EPTRTIEPRP GRLVLFPSTM
WHGTRPFRDG ERLTVAFDIA LPLR
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