Gene Swit_3134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3134 
Symbol 
ID5199056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3446267 
End bp3446971 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content72% 
IMG OID640582681 
Productdienelactone hydrolase 
Protein accessionYP_001263620 
Protein GI148556038 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0412] Dienelactone hydrolase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0587579 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.857355 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATCA TCACCAAGCC CGTCCGTTAC GGCCATGGCG GCGTCTCCTT CGAGGCCTAT 
GCGGCCTGGG ACGACGCCTC CGCCGCGCCG CGCCCGATCG TGCTGGTCGC CGGCACCTTC
ATGGGCCGCA CCGCCTTCGA GGAGGGCAAG GCGCGCAGCC TCGCCGAGCT CGGCTATGTC
GCGGTGGCGA TCGACCTCTA TGGCCTCGGC CACTGGCCGG CCGATTTCGA CGGCGCGCGG
GCGGCGATGG GAGCGCTCGA CGCCGATCGC GGCCTGCTGA AGGAGCGGCT GCTGGTCGCG
CTCGACGCGG CGCGGGGGAT CGGCGCGCCG GCCGATCCGG CGCGGGTCGC GGCGATCGGC
TTCTGCTTCG GCGGCAAGTG CGTGCTCGAC CTCGCCCGCT CGGGCGCCGA GGTCGCCGGG
GTGGCGAGCT TCCACGGCCT CTACGACGCG CCGCCCTTCC CGAACGCCGC GATCACGGCG
AAGGTGCTGG TCCTGCACGG CTGGGACGAC CCTCTCGACC CGCCCGAGAC GGTGCTCGGC
CTGGCCAAGG AGATGAGCGA GGCCAAGGTC GACTGGCAGG TCCACGCCTA TGGCCACACC
GTCCACGGCT TCACCAATCC GGCGCGCGAG GGGATGTACA GCCCCGCCGC CGACCGGCGC
AGCTGGCGGG CGATGCAGGA TTTCCTGGAG GAATTGTTTG GGTGA
 
Protein sequence
MSIITKPVRY GHGGVSFEAY AAWDDASAAP RPIVLVAGTF MGRTAFEEGK ARSLAELGYV 
AVAIDLYGLG HWPADFDGAR AAMGALDADR GLLKERLLVA LDAARGIGAP ADPARVAAIG
FCFGGKCVLD LARSGAEVAG VASFHGLYDA PPFPNAAITA KVLVLHGWDD PLDPPETVLG
LAKEMSEAKV DWQVHAYGHT VHGFTNPARE GMYSPAADRR SWRAMQDFLE ELFG