| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3111 |
|---|
| Symbol | |
|---|
| ID | 5200354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3421636 |
|---|
| End bp | 3422202 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640582659 |
|---|
| Product | HNH endonuclease |
|---|
| Protein accession | YP_001263598 |
|---|
| Protein GI | 148556016 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1403] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.599577 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCACT CCGATCTCAT GCGGCATCCG GACAGTTGCC CGGCGCTGGT GCTCAACGCG
GACTATACGC CGTTGAGCTA TTACCCCCTT TCGTTGTGGA ACTGGCAAAC CGCCATCAAG
GCGGTTTTTT TGGAACGTGT CGACATCGTC TCGCACTATG AGCGCGAGGT GCGCAGCCCG
ACCTTCGCGA TGAAGCTGCC TTCGGTCATC GCGCTGCGCC AATATGTGAA GCAGTCGGAG
AACCCGGCCT TCACCCGCTT CAACCTGTTC CTGCGCGACC GCTTCTCCTG CCAATATTGC
GGGTCGCTGT CCGATCTCAC CTTCGACCAT GTCATCCCGC GCGCGCAGGG CGGCCGGACG
ACGTGGGAGA ATGTCTCCAC CGCCTGCGCG CCGTGCAACC TGCGCAAGGG CGGCCGCACC
CCGCGCGAGG CGGGGATGCG CCTGTTCGAG ACGCCGCGCC GCCCGACCAG CTGGGAATTG
CAGGAGAACG GCCGCAGCTT CCCGCCGCAT TATCTGCACC AGAGCTGGCG CGACTGGCTC
TACTGGGACG TCGAGCTGGA GGCCTGA
|
|---|
| Protein sequence | MYHSDLMRHP DSCPALVLNA DYTPLSYYPL SLWNWQTAIK AVFLERVDIV SHYEREVRSP
TFAMKLPSVI ALRQYVKQSE NPAFTRFNLF LRDRFSCQYC GSLSDLTFDH VIPRAQGGRT
TWENVSTACA PCNLRKGGRT PREAGMRLFE TPRRPTSWEL QENGRSFPPH YLHQSWRDWL
YWDVELEA
|
|---|
| |