Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3080 |
Symbol | |
ID | 5197491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3379582 |
End bp | 3381714 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640582629 |
Product | TonB-dependent receptor |
Protein accession | YP_001263568 |
Protein GI | 148555986 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATTA TCGCAAGCGC GCTACTGCTC GGCACCGCAC TTTCGGCTGG GAGCGTCCAG GCACAGGCAA CCGCGGGAGC GGACGGTTCG GACGCCTATG GCGACATCCT CGTCACGGCC AACAAGACGG GCGCGACCCG CCTGCAGGAC ACGCCCCTCG CGATCACCGC GTTCAGCGCC CCGGCGCTGG AGGCGACCGG GATCAAGGAC GTGCGCGACC TGGCCTCGCT CACGCCGAAC CTGCAGGTGA CGCAGAATGC GTCCTTCTCG CAGGTCTATA TCCGCGGCAT CGGCTCGAAC AACGTGTTCG GCGGTTCGGA CCCATCGTCG ACGATCCATC TCGACGGCGT CTATCTGGCG CGCCCCGCCA GCTATCTCTC CAACTTCCTC GACGTCGAGC GGATCGAGGT GCTGCGCGGG CCGCAGGGCA CGCTCTACGG CCGCAACTCG GTGGGCGGCA CGATCAACGT CATCAGCCGC AAGCCGACCG ACGAGTTCGC CGCCAAGGCC CAGCTGACCT ACGGCAACTA TAATTTCGCG CGGGCCGAGG GCTATGTCAG CGGGCCGCTG GTCAAGGGCA AGGTCGACGG GTCGATCTCG CTCATCGGCA GCCGCCGCGA CGGCTATCTG AAGAACGTCG TCCCGGGCAT CGGCGATGCG GACAACGAAC GCACGTTCGG CGCGCGCGGC CAGCTCCGCT TCACCCCGTC GGAGCCGCTG GAGATCATCC TGCGCGGCGA CTATCTCCAT TCGAACGACG CGCTCGCGGG CTATGTGAAG CTGCTCCAGA CGACCGCCGA TCCGCTGGCC AACAGCGTGC TGGGCGATTA TCGCAAGGTC GCGCTCAACA TCCGCCCGAA GGCCAACCGC AAGCAATCGG GCGCGGCGGC CGAGATCAAT TACGACTTCG GCGACGCCGC CAAGCTCAAG TCGCTCACCG CCTACCGCGC CAACCGGCTC GTCCAGGCCG GCGACACCGA CGGCACGGCG CTGAACATCC GCCGCACCGA CCAATATGAG AAGCAGCATC AGTTCTCGGA GGAGCTGAAC CTGACGGGCA AGTTCGGCGG GCTGACCTAT ATCCTCGGCG CCTATTATTT CGACGAGCAT ATCGACGTCG ATTCCACCGT CACCACCTTC CCGACGGTGC GGGCGAACTT CTCGCCGACG ATCAACACCA AGGCGTGGGC GGGCTTCGCG CAGGGCAATT ATGCGCTGAC CGACCAGCTC AGCCTGACCG CGGGCATCCG CTATACCCGC GAACGGAAGC GCTTCGACCA GGTGGCGACC AATTTCGACT TCGCCACCGG GCTGCCGCTC GCCACCTATC CGCGGACCTA TTCGACGGCG GGCACCTACA AGGCGTGGAC GCCGAAATTC GGTATCGAGT TCCGGCCGAC CGACGGCGTG CTGCTGTTCG CGTCGGCGAC CCGGGGCTTC AAGTCGGGCG GGTTCAACTT CGCCAGCGCC AACCCCGCGC AGGGCTTCGC GCCGGAGACG CTGTGGAGCT ATGAAGCGGG CGCCAAGCTC GACCTGTTCG ACCGCAAGCT GCGCCTGAAC GGCACCTATT TCCACTATGA CTACAAGGGC CTGCAGGTGC AGTCCTTCCT GACGCCGGGC GTGATCGACA TCACCAACGC GTCCGACGCC ACGGTCGACG GCGTCGAGAT CGAGGCGGAG GCGCATCCGA CCGACTGGCT GCAGCTCGGC GCGAACCTCG CTTATCTGGA TGCGGTCTAC AAGAACTACA CCTCGGCGCT CAAACCGGGG AACATCGTGT TCGATGCGTC GGGCAACCGG CTGAACCTGT CGCCCAGATG GTCGTACACC CTCTATGCTC AGGCCGACGT GCCGGTGGGC GACGGCGCCT TCTTCGCGCG CGGCGAATAT AGCCACCGCA CCCGGCAATA TTTCACGGCG ATCAACGGCG GCCTCGACCA GCAGGCCGGC TATGGGCTGA TCAACGCCAG CATCGGCTAC ACGCTGCCGG GCGATCATAT CCAGTTCCTG CTGTTCGGCC GCAACCTCGC CGACAAGGAA TATGTCACCA GCACGGCGAG CTTCGCGTCC GGCATCGTCG GCCGCGTCGG CGAACCGCGC ACCTACGGCA TCCGGGCCGT GTTCAAATAT TGA
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Protein sequence | MKIIASALLL GTALSAGSVQ AQATAGADGS DAYGDILVTA NKTGATRLQD TPLAITAFSA PALEATGIKD VRDLASLTPN LQVTQNASFS QVYIRGIGSN NVFGGSDPSS TIHLDGVYLA RPASYLSNFL DVERIEVLRG PQGTLYGRNS VGGTINVISR KPTDEFAAKA QLTYGNYNFA RAEGYVSGPL VKGKVDGSIS LIGSRRDGYL KNVVPGIGDA DNERTFGARG QLRFTPSEPL EIILRGDYLH SNDALAGYVK LLQTTADPLA NSVLGDYRKV ALNIRPKANR KQSGAAAEIN YDFGDAAKLK SLTAYRANRL VQAGDTDGTA LNIRRTDQYE KQHQFSEELN LTGKFGGLTY ILGAYYFDEH IDVDSTVTTF PTVRANFSPT INTKAWAGFA QGNYALTDQL SLTAGIRYTR ERKRFDQVAT NFDFATGLPL ATYPRTYSTA GTYKAWTPKF GIEFRPTDGV LLFASATRGF KSGGFNFASA NPAQGFAPET LWSYEAGAKL DLFDRKLRLN GTYFHYDYKG LQVQSFLTPG VIDITNASDA TVDGVEIEAE AHPTDWLQLG ANLAYLDAVY KNYTSALKPG NIVFDASGNR LNLSPRWSYT LYAQADVPVG DGAFFARGEY SHRTRQYFTA INGGLDQQAG YGLINASIGY TLPGDHIQFL LFGRNLADKE YVTSTASFAS GIVGRVGEPR TYGIRAVFKY
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