Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3050 |
Symbol | |
ID | 5199137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3348566 |
End bp | 3349939 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640582599 |
Product | IS4 family transposase |
Protein accession | YP_001263538 |
Protein GI | 148555956 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3666] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000789979 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGGGCG AGCGGACGGT GGCGCAGGAA GCGCTGTTCT ACAGCTTCAA TCTGGAGCGG CATGTGCCGC CGGATCATCT GCTACGCTCG ATCGACCGGT TCGTGGACCT GTCGGATATC CGCGAGCACC TGCGGCCTTA TTATAGCGAG ACGGGTCGGC CATCGATCGA CCCAGAGTTG ATGATCCGGA TGCTGATCAT CGGCTATTGC ATGGGCATCC GGTCGGAGCG ACGGCTGTGT GACGAGGTGC ATCTCAACCT CGCCTATCGC TGGTTCTGCC GGCTGGGGCT GGAGGGCGAC GTGCCCGATC ACTCGACGTT CTCGAAGAAC CGGCATGGAC GCTTCCGCGA CAGCGATCTG CTGCGGCAAC TGTTCGAGAT GACGGTGGCG CGCTGCATGG CCGAAGGACT GGTCGGCGGC GAAGGCTTTG CGGTCGATGC GAGCCTGATC CGGGCGGATG TCCACCGGCA ACGGTCGGTG CCGGGTGAAG AGGGCTTGCC GCCGGAAGCG GTCGGTCGTG CGGTCGCTGA GTATCTGGAC GTGCTGGACG ATGCGGCGTT CGGCGGTGCA ACGCCGGTGA CACCCAAGCG GATCAATCTC ACCGATCCAG CCTCGCGCTG GACCGCCGCC ACGCGCGAGG CGGCCTTTTA CGCCTACAGC ACCAACTATC TGATCGACCT CGATCATGCG GTCATCGTCG ATGTCGAGGC GACCACCTCG GTGCGGCAGG CGGAGGTGAC CGCCCAGCGC AGGATGATCG AGCGAACGCA GGATCGCTTC GGCATCTGGC CCGAGCGCCT CGTGGCCGAT ACCGCCTATG GCTCTGCCCC CAACCTGGCC TGGCTGGTCG AAGAGATGAG CATCGAGCCG CATATTCCGG TGTTCGACAA GTCCGCTCGG ACTGACGGCA GCTTCGAGCG CGCCGACTTC GTCTATGACC ATGATGACGA CAGCTACATC TGCCCGGTCG GCAACCGCCT ACGGCGTTCC AACCGCAACT TCAGCACGCC CCGTGATCGC GTCGATAAGG ACGGTTCGAT CCGCTACCGC GCGCGTCAGC AGGACTGCCA GAGCTGTGCT CTGCGCCAGC GATGCACGCC CAACATGCCC GCTCGCAAGG TCACCCGATC GATCCACGAA GGCGCGCGCG ATCTGGCCCG CGACATCGCC ACCACCGACG CGTATCTCGT CTCACGTCGC CAGCGCAAGA AGGTCGAGAT GCTGTTCGCC CACCTCAAGC GCATCCTGAA GCTGGATCGC TTGCGCCTGC GCGGCCCCAA TGGCGCAAGA GACGAGTTCC ACCTCGCCGC AGCGGCACAG AACCTCCGCA AAATGGCAAA GATCATCCCG ATGGCCAGGC CCGCACCGGC CTGA
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Protein sequence | MMGERTVAQE ALFYSFNLER HVPPDHLLRS IDRFVDLSDI REHLRPYYSE TGRPSIDPEL MIRMLIIGYC MGIRSERRLC DEVHLNLAYR WFCRLGLEGD VPDHSTFSKN RHGRFRDSDL LRQLFEMTVA RCMAEGLVGG EGFAVDASLI RADVHRQRSV PGEEGLPPEA VGRAVAEYLD VLDDAAFGGA TPVTPKRINL TDPASRWTAA TREAAFYAYS TNYLIDLDHA VIVDVEATTS VRQAEVTAQR RMIERTQDRF GIWPERLVAD TAYGSAPNLA WLVEEMSIEP HIPVFDKSAR TDGSFERADF VYDHDDDSYI CPVGNRLRRS NRNFSTPRDR VDKDGSIRYR ARQQDCQSCA LRQRCTPNMP ARKVTRSIHE GARDLARDIA TTDAYLVSRR QRKKVEMLFA HLKRILKLDR LRLRGPNGAR DEFHLAAAAQ NLRKMAKIIP MARPAPA
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