Gene Swit_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3000 
Symbol 
ID5196887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3286957 
End bp3287739 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content66% 
IMG OID640582549 
Productpantothenate kinase 
Protein accessionYP_001263489 
Protein GI148555907 
COG category[K] Transcription 
COG ID[COG1521] Putative transcriptional regulator, homolog of Bvg accessory factor 
TIGRFAM ID[TIGR00671] pantothenate kinase, type III 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTTG CGATCGACGC TGGGAACACC AATATCGTCT TCGCGCTGGT CGACGGCGGC 
GCGATCGTCG CGCGCTGGCG GATCGCCACC GACGCGCGCC GCACGGCCGA CGAATATGCG
GTCTGGCTCC ACCAGCTCCT CCAGCTCGAG GGCCATGACC GCTCGGTGAT CGAGGCGGTG
ATCATCGCCA CCGTGGTGCC GCGCGCGCTC CACAATCTGG AGGTGCTGGC ATCGAAATAT
TTCGGGGTCG AGGCGCTGGT CGCGGGACGG CCGCCGGTCG AATGGGGCAT CACCCTCGAC
GTCGACGAGC CGCAGAATGT CGGCGCCGAC CGCGCCGTCA ACGTGATCGC GGCGCACAAG
CGGCATCCGG GCGACCTGAT CCTGATCGAC TTCGGCACCG CGACGACCTT CGACGTGGTC
GACTATAGCG GCGCCTACAA GGGCGGGATC ATCGCGCCGG GCATCAACCT GTCGCTCGAC
GCGCTGGTCG CCGCCGCCGC GAAGCTGCCC CGCATCGCGA TCGAGGCGCC CGAGACATCG
ACGGTGATCG GCCGGACGAC GCAGGATCAG ATGTTGATCG GCATCTATTT CGGCTATGTC
GCGATGATCG AGGGGCTGGT CGCGCGGATG AAGGCGGAGA TCGGCCGCCC CGCCACGGTG
ATCGCCACCG GCGGCCTCGC CACATTGTTC GAACGGCATG TGAAGCTGTT CGACAGCATC
GAACCGGATC TCACGATCCA GGGCCTCGGC ATCATGTATG ATCGCCTCAA GACGGGCCCA
TAA
 
Protein sequence
MLLAIDAGNT NIVFALVDGG AIVARWRIAT DARRTADEYA VWLHQLLQLE GHDRSVIEAV 
IIATVVPRAL HNLEVLASKY FGVEALVAGR PPVEWGITLD VDEPQNVGAD RAVNVIAAHK
RHPGDLILID FGTATTFDVV DYSGAYKGGI IAPGINLSLD ALVAAAAKLP RIAIEAPETS
TVIGRTTQDQ MLIGIYFGYV AMIEGLVARM KAEIGRPATV IATGGLATLF ERHVKLFDSI
EPDLTIQGLG IMYDRLKTGP