| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2988 |
|---|
| Symbol | |
|---|
| ID | 5197786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3273737 |
|---|
| End bp | 3275035 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640582537 |
|---|
| Product | NADH dehydrogenase I subunit F |
|---|
| Protein accession | YP_001263477 |
|---|
| Protein GI | 148555895 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.437641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.652273 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTGACG ACAAGGACCG CATCTTCACC AACGTCTACG GGTTCCAACC CTGGAACCTG
GAGGCGGCGC GCAAGCGCGG CGACTGGGAC GACACCAAGG CGCTGCTCGC GCGCGGGCCC
GACCAGATCA TCGAGGACAT CAAGGCCTCC GGCCTGCGCG GTCGCGGCGG CGCGGGCTTC
CCGACCGGCA TGAAGTGGAG CTTCATGCCG AAGGAGCCGA AGCCGGGCCG TCCCAGCTTC
CTGGTGATCA ACGCCGATGA GTCCGAGCCG GGATCGTGCA AGGACCGCGA GATCATCCGC
CACGATCCGC ACAAGCTGAT CGAGGGCGCG CTGGTCGCCG GCTTCGCGAT GCGCGCGCGG
GCGGCCTATA TCTACATCCG CGGCGAATTC ATCTACGAGG CGAAGGTGCT GTTCGCCGCC
GTGGAGGAGG CCTATGCGGC CGGCCTGCTC GGCAAGAACG CCGCCGGATC GGGCTATGAC
TTCGACGTTT TCGTCCATCG CGGCGCGGGC GCCTATATCT GCGGCGAGGA GACCGCCCAG
ATCGAGAGCC TCGAGGGCAA GAAGGGCCAG CCGCGCCTGA AGCCGCCCTT CCCGGCGGGC
GCGGGCCTCT ACGGCTGCCC GACCACGGTC AACAACGTCG AATCGATCGC GGTGGCGCCG
ACCATCCTGC GGCGCGGCGC GGCGTGGTTC GCCGGCATCG GCCGCGAGGG CAACAAGGGC
ACCAAGCTCT TCCAGATCTC GGGCCATGTG AACAAGCCGT GCGTCGTCGA GGAGGCGATG
GGCATCCCGT TCCGCGAGCT GATCGACCGC CACGCCGGCG GCATCCGCGG CGGCTGGGAC
AATCTGCTCG CGGTGATCCC GGGCGGCTCG TCGGTGCCGC TGGTCCCGGC TGCGCAGATC
ATGGACGCGC CGATGGACTT CGACGGGCTC AAGGCGCTCG GCTCGGGCCT CGGCACCGCC
GCCGTGATCG TCATGGACAA GTCGACCGAC ATCGTCCGCG CGATCAGCCG GCTCAGCTAT
TTCTACAAGC ATGAGAGCTG CGGCCAGTGC ACGCCGTGCC GCGAGGGCAC CGGCTGGATG
TGGCGCGTGA TGGAGCGGCT GCGCACCGGC GAGGCGCGCA TCGACGAGAT CGACACGCTG
CTCGACGTCA CCAAGCAGGT CGAGGGTCAC ACCATCTGCG CCCTGGGCGA TGCGGCCGCC
TGGCCGATCC AGGGCCTGTT GCGTCATTTC CGCCCCGAGG TGGAGCGCCG GATCCGGGAG
CGCGGCAACG ACGGCGCGAT GATGGAGGCA GCCGAATGA
|
|---|
| Protein sequence | MLDDKDRIFT NVYGFQPWNL EAARKRGDWD DTKALLARGP DQIIEDIKAS GLRGRGGAGF
PTGMKWSFMP KEPKPGRPSF LVINADESEP GSCKDREIIR HDPHKLIEGA LVAGFAMRAR
AAYIYIRGEF IYEAKVLFAA VEEAYAAGLL GKNAAGSGYD FDVFVHRGAG AYICGEETAQ
IESLEGKKGQ PRLKPPFPAG AGLYGCPTTV NNVESIAVAP TILRRGAAWF AGIGREGNKG
TKLFQISGHV NKPCVVEEAM GIPFRELIDR HAGGIRGGWD NLLAVIPGGS SVPLVPAAQI
MDAPMDFDGL KALGSGLGTA AVIVMDKSTD IVRAISRLSY FYKHESCGQC TPCREGTGWM
WRVMERLRTG EARIDEIDTL LDVTKQVEGH TICALGDAAA WPIQGLLRHF RPEVERRIRE
RGNDGAMMEA AE
|
|---|
| |