| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2927 |
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| Symbol | |
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| ID | 5199934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3214831 |
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| End bp | 3216474 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640582477 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001263417 |
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| Protein GI | 148555835 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.88405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.302817 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGGCA AGACGATCGA GGAGGGCCCG CCCGCGCGCC CGCCGCGCGA TCGCGGCGAC
CGGCTCGCCG CCGGGGTGAC GATCGCCGCG GTGCTGCTGG TCTGCGCCTC GGCCTTCGCC
GTCGCCGGAT CGGTGGCCCG CTCGGTCCAC GGCGCGCTGT CGGTCACCGA CAATCTGACG
ATCTCGGTGC TGCTGCTCAA CGTCGCGCTG ACCCTGCTCG GCTGGCGCCG CTATCGCGCG
CTCAAGCAGG AGGTGGCATT GCGCCGCGCC GCCGAGGCGC GGGCGAGCGA ATTGGCGACC
AGCGATCCGC TGACCGGCCT GCTCAACCGC CGCGCGCTCG GCGAGAGCGG GGCGCGGCTG
GTCGACGCCT CGCTCGGCCA GCGCCGGCCG GTGGCGATGC TGATGATCGA CCTCGACCAT
TTCAAGTCGG TCAACGACCT CCACGGGCAT CTCGCCGGCG ACCAGCTGCT CCGCGCCGCC
TCCGCCGCGA TCGTCGCGCC GCTGCCGCCG CACGCGCTCG CCGCGCGGCT CGGCGGCGAC
GAGTTCGCTT GCGCCTTCGC CTTCGATCCC GACCAGCCGG CGGCGGTCGA CCATGTCGCC
GACGCGATCC TCGCGCGGAT CGCCGAGCCC TTCCTGATCG GCGGGGTCGA GGCGCGGATC
GGCGCGTCGC TGGGCATCGC CCGGACCGAG GCGGGCTGCC GCACCATCGA CACGCTGATG
CGCCGGTCGG ACATCGCGCT CTACGCCGCC AAGCGCGCGG GGCGGAACCA GCGCGCCTGG
TTCGACGCGA GCATGGAGCG CGAGCTGGAG CTGCGCAACG AGATCGAATT GGGCCTGCGC
GCCGGCATCC CGTCGGGCCG GATCGTCCCC TGGTTCGAAC CGCAGGTCGA CCTCGCCACC
GGCGCGCTGA CCGGCTTCGA GCTGCTGGCG CGCTGGGACC ATCCCGACCA TGGCATCATC
GAGCCGGCGG CGTTCATCCC GGTCGCCGAG GAAGCGGGGC TGATCGGCGA GCTGTCGATG
TCGGTGATGC GCGCCGGGAT CGAGGAGGCG CGCCACTGGG ACCCGTCGCT GCTGCTCAGC
GTCAACATCA GCCCGTCGCA GATGCGCGAC CCGTGGCTCG CCCAGAAGAT CGTCAAGCTG
CTGACCGAGA CGAGCTTCCC GGCCGAGCGG CTCGAGGTCG AGATCACCGA GGCGGCGCTG
TTCGAGAATC TCGGCCTCGC CGCGTCGATC GTCGCCAGCC TGAAGAACCA GCGCATCCGC
GTCGCGCTCG ACGATTTCGG CACCGGCTAT TCGAGCCTGA CCCATTTGCG GACGCTGCCG
CTCGACCGGA TCAAGATCGA CCGCAGCTTC GTCCTGCGCA TGACCGAGGA TGCCGAGGCG
GCGGCGCTGG TCCGCCTGAT CGTCTCGCTC GCCCAGGGGC TCGACGTGCC GGTGCTGGCG
GAGGGCGTCG AGACCGGCGA GATCGCGGCG ATGCTGACCG CGATCGGCTG CACCATGGCC
CAGGGCTGGC ATTTCGGCCG GCCCGCGCCG GCCCGCGCCA CGCGCGGCCT GCTCGCCGGC
CGCGGCCTGC TCTCCGCCGC CAGCCCGATC GCCCGCGACG GCGAGGTCGT CGCGATGCGC
CAGCGCCGCC GCAAACGGGC GTGA
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| Protein sequence | MRGKTIEEGP PARPPRDRGD RLAAGVTIAA VLLVCASAFA VAGSVARSVH GALSVTDNLT
ISVLLLNVAL TLLGWRRYRA LKQEVALRRA AEARASELAT SDPLTGLLNR RALGESGARL
VDASLGQRRP VAMLMIDLDH FKSVNDLHGH LAGDQLLRAA SAAIVAPLPP HALAARLGGD
EFACAFAFDP DQPAAVDHVA DAILARIAEP FLIGGVEARI GASLGIARTE AGCRTIDTLM
RRSDIALYAA KRAGRNQRAW FDASMERELE LRNEIELGLR AGIPSGRIVP WFEPQVDLAT
GALTGFELLA RWDHPDHGII EPAAFIPVAE EAGLIGELSM SVMRAGIEEA RHWDPSLLLS
VNISPSQMRD PWLAQKIVKL LTETSFPAER LEVEITEAAL FENLGLAASI VASLKNQRIR
VALDDFGTGY SSLTHLRTLP LDRIKIDRSF VLRMTEDAEA AALVRLIVSL AQGLDVPVLA
EGVETGEIAA MLTAIGCTMA QGWHFGRPAP ARATRGLLAG RGLLSAASPI ARDGEVVAMR
QRRRKRA
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