| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2925 |
|---|
| Symbol | |
|---|
| ID | 5199932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3211242 |
|---|
| End bp | 3212855 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582475 |
|---|
| Product | EAL domain-containing protein |
|---|
| Protein accession | YP_001263415 |
|---|
| Protein GI | 148555833 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4943] Predicted signal transduction protein containing sensor and EAL domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.341771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAGAC GGACGATCCT GATTATCGCG GCCTGTCTCG CCATCCTGGC GGGGCTGCTG
CCGATGGTCG CCGTCGCCCA TCTGCTGCGG GTCCGCGCGG TCGCGGCCGA GCAGCGCCAC
ATGGAGGAAT ATGCCCGCTG GACGCTGATC CGCGCCAACC AGGTGTTCGC GGACGCCCGG
CGGACGCTGC TCGCCGCCGA GGTCCCGCCC GGGACCGAAT GCTCGCCCGA GCATGTCGCA
CGGCTGCGGC AGATCGCGAT GGACGCGCGG AGCGTCGAGG ATATCGGTTA TTTCCGCGAC
GGCCGCCTCG CCTGCACCAG CCTCGGCCCG GTCGGCCAGC GCGTTCCCCG GACCCCGCCT
GACCTGCGGC TCGGCGGAGG CTTCGCCGTC ATCTTCCACC TCCAGCCGCG CACCTTCCGC
AGCCAGCCGA TGCTGGCGAT GAGCCATGGC GGCTACACCG CGCTGATCAA GCCCGAACGG
CTGGTCGACG TCCTGACCGA CAGCCATATG ACGCTCGGCA TCGCCGCCGG CCCCGGCCGG
CTGATCGCCC TGTCGGGCAG GACCGATCCG CAGTTGCTCC GCACGCTGAT CGCGGGCCCG
ACGGCGGGCA TCGACGATCA CCACGTCTTC GCGTCGCTGC GCGAGGCGCC GCTGACCGCC
TTCGCCTTCA GCGACCGCGC CCAGGCGCTC GGCCGGCTGC GCAACGACTA TCTGCTGCTG
CTGCCGATGG GCCTGCTCGT CTCGACCCTC CTGGTCGGGC TCGTGATCTG GGTGTCGCGG
CAGCGGCTGT CGCCCGAGAA GGAGTTGGCG ATCGCGATCC GCAAGCGCGA ATTCGTCGTG
CATTACCAGC CGATCATCGA CCTTTCGAAC GGCCGCTGCG TCGCCGCCGA GGCGCTGCTG
CGCTGGCGCC GGCCCGACGG CCGCTGGATC GGGCCCGACC TGTTCATCCC GCTCGCCGAG
GAGACCGGGC TGATCTCGCC GCTCACCGAC CTGTTGATCG AGCGGGTGAT CGAGGACCAG
GCGGCGCTGC TGCGCGCCGA CCGCGACCTC CACATATCGA TCAACATCTC CGCGCGCGAC
CTGGAGAGCG GGCGCTTCCT GCCGGTGCTG ACCGAGGCGG TGACGCGGTC CGGGGTCGCG
CCGTCGCAGA TCTGGATCGA GGCGACCGAG CAGGGCTTCA TCCGCGCCGA GATCGCGGCG
GGCGCGGTCG AGGCGGCGCG CGCGGCGGGG CACATGGTCG CGATCGACGA TTTCGGCACC
GGCTATTCGA GCCTGTCGCT GCTCCAGGGA TTGCCGCTCG ACGCGCTCAA GATCGACAAG
TCGTTCGTCG AGGCGATCGC CACCGACGCC GCGACCAGCG TGGTGACGCC GCACATCATC
GACATGGCGC ACGGGCTGAA GCTGCGCATC ATCGCCGAAG GCGTCGAGAC GCGCGAGCAG
GAGGCCTATC TCAGGGCCGC CGGGGTCCGG CTCGCGCAGG GATGGCTCTA CTCACACGCG
CTGCCCGCCA GCGAATTCGC CACCTTCCAT CAGGATCGCA AGGTGCAGGG CGGCGGCGCC
TCCGCCCGGC GGGCCCGCGC GCGATCGGGC GGCGACGCCA TCGCCGCGCG ATAG
|
|---|
| Protein sequence | MRRRTILIIA ACLAILAGLL PMVAVAHLLR VRAVAAEQRH MEEYARWTLI RANQVFADAR
RTLLAAEVPP GTECSPEHVA RLRQIAMDAR SVEDIGYFRD GRLACTSLGP VGQRVPRTPP
DLRLGGGFAV IFHLQPRTFR SQPMLAMSHG GYTALIKPER LVDVLTDSHM TLGIAAGPGR
LIALSGRTDP QLLRTLIAGP TAGIDDHHVF ASLREAPLTA FAFSDRAQAL GRLRNDYLLL
LPMGLLVSTL LVGLVIWVSR QRLSPEKELA IAIRKREFVV HYQPIIDLSN GRCVAAEALL
RWRRPDGRWI GPDLFIPLAE ETGLISPLTD LLIERVIEDQ AALLRADRDL HISINISARD
LESGRFLPVL TEAVTRSGVA PSQIWIEATE QGFIRAEIAA GAVEAARAAG HMVAIDDFGT
GYSSLSLLQG LPLDALKIDK SFVEAIATDA ATSVVTPHII DMAHGLKLRI IAEGVETREQ
EAYLRAAGVR LAQGWLYSHA LPASEFATFH QDRKVQGGGA SARRARARSG GDAIAAR
|
|---|
| |